Metzgeria hamata (metzgeria_hamata)
Imported from atlas release summary for Metzgeria hamata.
585
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
585
Candidate Genes
C4H
7.52%
BAHD
6.71%
POD
6.33%
C3'H/CYP98A
5.14%
CYP76
5.02%
IFS
3.95%
4CL
3.57%
NMT
2.76%
Other Families
59.0%
More Families (96)
UGT
41
2.57%
F3H
40
2.51%
T3O
39
2.45%
UFGT
37
2.32%
7DLGT
36
2.26%
DWF4/CYP90B1
35
2.19%
TRI/TRII
34
2.13%
BR6OX2/CYP85A2
34
2.13%
STR
33
2.07%
IFR
32
2.01%
GS
27
1.69%
H6H
27
1.69%
RAS
26
1.63%
SMT1/SMT2/SMT3
24
1.5%
T16H
22
1.38%
HCT
19
1.19%
CAD
19
1.19%
COMT
17
1.07%
PYKS
15
0.94%
CODM/T6ODM
15
0.94%
CSE
15
0.94%
CNMT
14
0.88%
F3'5'H/CYP75A
14
0.88%
CYP71
14
0.88%
IO
13
0.82%
PMT
12
0.75%
G8O/G8H
12
0.75%
PAL
12
0.75%
SGD
11
0.69%
F3'H/CYP75B
11
0.69%
SLS
10
0.63%
CHS
9
0.56%
ANR
9
0.56%
CAS
9
0.56%
ISY
8
0.5%
CPD/CYP90A1
8
0.5%
COR
7
0.44%
16OMT
6
0.38%
DFR
6
0.38%
HPPR
6
0.38%
SQS/FDFT1
6
0.38%
ROT3/CYP90C1
6
0.38%
CYP90D1
6
0.38%
AACT
6
0.38%
GGPPS
6
0.38%
NCS
5
0.31%
ANS/LDOX
5
0.31%
LAC
5
0.31%
BR6OX1/CYP85A1
5
0.31%
FPPS
5
0.31%
8HGO
4
0.25%
CYP80B1
4
0.25%
TDC
4
0.25%
BBE
4
0.25%
CYP719
4
0.25%
FNS
4
0.25%
F5H/CYP84A
4
0.25%
CCoAOMT
4
0.25%
CCR
4
0.25%
7DLH
3
0.19%
ADC
3
0.19%
CPR
3
0.19%
TAT
3
0.19%
CYP51G1
3
0.19%
SMO1/SMO2
3
0.19%
SQE
3
0.19%
DET2
3
0.19%
HMGR
3
0.19%
MVK
3
0.19%
MCT/IspD
3
0.19%
GPPS
3
0.19%
GES
2
0.13%
LAMT
2
0.13%
TYDC_DDC
2
0.13%
XMT_MXMT_DXMT
2
0.13%
MPO
2
0.13%
DWF1
2
0.13%
HMGS
2
0.13%
DXS
2
0.13%
MVD
2
0.13%
TPS
2
0.13%
IDI
2
0.13%
6OMT_4OMT_SOMT
1
0.06%
CHI
1
0.06%
FLS
1
0.06%
DWF5
1
0.06%
HYD1
1
0.06%
CPI1
1
0.06%
DWF7
1
0.06%
FK
1
0.06%
HDS/IspG
1
0.06%
HDR/IspH
1
0.06%
MDS/IspF
1
0.06%
CMK/IspE
1
0.06%
DXR
1
0.06%
PMK
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 161 | 11 | POD (96) | View species results |
| Terpenoid pathway | 144 | 21 | BAHD (59) | View species results |
| Alkaloid pathway | 126 | 18 | TRI/TRII (26) | View species results |
| Flavonoid pathway | 65 | 9 | UFGT (28) | View species results |
| Rosmarinic acid pathway | 55 | 7 | C4H (31) | View species results |
| Steroid pathway | 34 | 11 | SMT1/SMT2/SMT3 (12) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 592 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 152 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Mhamcontig_1050006590 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Mhamcontig_1150014560 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Mhamcontig_1160015340 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Mhamcontig_1160015390 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Mhamcontig_1280037630 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Mhamcontig_1280037650 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Mhamcontig_1280037670 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Mhamcontig_1280037810 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Mhamcontig_1290039320 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Mhamcontig_1310051440 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Mhamcontig_1310052660 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Mhamcontig_140063140 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Mhamcontig_140063330 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Mhamcontig_1420065670 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Mhamcontig_1420066290 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Mhamcontig_1420066300 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Mhamcontig_1500073300 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Mhamcontig_1500073320 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Mhamcontig_1500073940 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Mhamcontig_1610088950 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Mhamcontig_1660100100 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Mhamcontig_1910133360 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Mhamcontig_1930134860 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Mhamcontig_1940137050 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Mhamcontig_2000142690 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Mhamcontig_240188090 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Mhamcontig_390209420 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Mhamcontig_410213020 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Mhamcontig_410213040 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Mhamcontig_540223010 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Mhamcontig_60229850 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Mhamcontig_610236580 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Mhamcontig_710260720 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Mhamcontig_90280310 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |