PlantSME Plant secondary metabolism enzyme database

Nelumbo nucifera (nelumbo_nucifera)

Imported from atlas release summary for Nelumbo nucifera.

1227
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 25.26% Phenylpropanoid pathway 25.18% Alkaloid pathway 21.76% Flavonoid pathway 13.2% Rosmarinic acid pathway 8.96% Steroid pathway 5.62%
Family Distribution
C4H 6.13% BAHD 5.87% C3'H/CYP98A 5.41% POD 5.08% 4CL 4.23% IFS 3.9% UGT 3.48% T3O 3.11%
Other Families 62.79%
More Families (94)
CYP76 94 3.08% 7DLGT 92 3.02% UFGT 85 2.79% F3H 76 2.49% NMT 73 2.39% DWF4/CYP90B1 71 2.33% STR 68 2.23% BR6OX2/CYP85A2 53 1.74% PAL 51 1.67% CODM/T6ODM 49 1.61% F3'H/CYP75B 48 1.57% SMT1/SMT2/SMT3 43 1.41% TRI/TRII 40 1.31% CAD 39 1.28% CSE 37 1.21% H6H 36 1.18% SGD 36 1.18% PYKS 35 1.15% LAC 34 1.11% CAS 34 1.11% CYP71 32 1.05% 7DLH 31 1.02% HCT 30 0.98% T16H 28 0.92% IFR 28 0.92% COMT 27 0.89% RAS 25 0.82% CYP90D1 25 0.82% FNS 23 0.75% PMT 21 0.69% G8O/G8H 20 0.66% 8HGO 20 0.66% GS 20 0.66% F5H/CYP84A 20 0.66% IO 19 0.62% GES 19 0.62% ANR 19 0.62% DFR 19 0.62% TYDC_DDC 18 0.59% LAMT 18 0.59% CCR 18 0.59% TPS 18 0.59% 16OMT 17 0.56% CPD/CYP90A1 17 0.56% COR 15 0.49% F3'5'H/CYP75A 14 0.46% BR6OX1/CYP85A1 14 0.46% NCS 13 0.43% CYP51G1 13 0.43% GGPPS 13 0.43% BBE 12 0.39% SLS 12 0.39% ANS/LDOX 10 0.33% CPR 10 0.33% ISY 8 0.26% CHS 8 0.26% TAT 8 0.26% FPPS 8 0.26% ODC 7 0.23% TDC 7 0.23% CHI 7 0.23% CCoAOMT 7 0.23% HPPR 7 0.23% MVD 7 0.23% CNMT 6 0.2% CYP719 6 0.2% MPO 6 0.2% ROT3/CYP90C1 6 0.2% SMO1/SMO2 5 0.16% AACT 5 0.16% HDS/IspG 5 0.16% MVK 5 0.16% SQS/FDFT1 4 0.13% SQE 4 0.13% DET2 4 0.13% CYP80B1 3 0.1% XMT_MXMT_DXMT 3 0.1% DXS 3 0.1% HMGR 3 0.1% ADC 2 0.07% FLS 2 0.07% DWF7 2 0.07% HYD1 2 0.07% HMGS 2 0.07% HDR/IspH 2 0.07% FK 1 0.03% CPI1 1 0.03% DWF1 1 0.03% PMK 1 0.03% MDS/IspF 1 0.03% MCT/IspD 1 0.03% DXR 1 0.03% CMK/IspE 1 0.03% IDI 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 310 18 BAHD (128) View species results
Phenylpropanoid pathway 309 11 POD (137) View species results
Alkaloid pathway 267 19 NMT (38) View species results
Flavonoid pathway 162 8 UFGT (81) View species results
Rosmarinic acid pathway 110 7 C4H (33) View species results
Steroid pathway 69 11 CAS (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1092 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 234 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HDS/IspG
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Gene Pathway Family Confidence Status
Nnucmegascaffold_10027320.1 Terpenoid HDS/IspG medium pass
Nnucmegascaffold_260136600.1 Terpenoid HDS/IspG low borderline
Nnucmegascaffold_30141850.1 Terpenoid HDS/IspG high pass
Nnucmegascaffold_50207530.1 Terpenoid HDS/IspG medium pass
Nnucmegascaffold_60224650.1 Terpenoid HDS/IspG low borderline