Nelumbo nucifera (nelumbo_nucifera)
Imported from atlas release summary for Nelumbo nucifera.
1227
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1227
Candidate Genes
C4H
6.13%
BAHD
5.87%
C3'H/CYP98A
5.41%
POD
5.08%
4CL
4.23%
IFS
3.9%
UGT
3.48%
T3O
3.11%
Other Families
62.79%
More Families (94)
CYP76
94
3.08%
7DLGT
92
3.02%
UFGT
85
2.79%
F3H
76
2.49%
NMT
73
2.39%
DWF4/CYP90B1
71
2.33%
STR
68
2.23%
BR6OX2/CYP85A2
53
1.74%
PAL
51
1.67%
CODM/T6ODM
49
1.61%
F3'H/CYP75B
48
1.57%
SMT1/SMT2/SMT3
43
1.41%
TRI/TRII
40
1.31%
CAD
39
1.28%
CSE
37
1.21%
H6H
36
1.18%
SGD
36
1.18%
PYKS
35
1.15%
LAC
34
1.11%
CAS
34
1.11%
CYP71
32
1.05%
7DLH
31
1.02%
HCT
30
0.98%
T16H
28
0.92%
IFR
28
0.92%
COMT
27
0.89%
RAS
25
0.82%
CYP90D1
25
0.82%
FNS
23
0.75%
PMT
21
0.69%
G8O/G8H
20
0.66%
8HGO
20
0.66%
GS
20
0.66%
F5H/CYP84A
20
0.66%
IO
19
0.62%
GES
19
0.62%
ANR
19
0.62%
DFR
19
0.62%
TYDC_DDC
18
0.59%
LAMT
18
0.59%
CCR
18
0.59%
TPS
18
0.59%
16OMT
17
0.56%
CPD/CYP90A1
17
0.56%
COR
15
0.49%
F3'5'H/CYP75A
14
0.46%
BR6OX1/CYP85A1
14
0.46%
NCS
13
0.43%
CYP51G1
13
0.43%
GGPPS
13
0.43%
BBE
12
0.39%
SLS
12
0.39%
ANS/LDOX
10
0.33%
CPR
10
0.33%
ISY
8
0.26%
CHS
8
0.26%
TAT
8
0.26%
FPPS
8
0.26%
ODC
7
0.23%
TDC
7
0.23%
CHI
7
0.23%
CCoAOMT
7
0.23%
HPPR
7
0.23%
MVD
7
0.23%
CNMT
6
0.2%
CYP719
6
0.2%
MPO
6
0.2%
ROT3/CYP90C1
6
0.2%
SMO1/SMO2
5
0.16%
AACT
5
0.16%
HDS/IspG
5
0.16%
MVK
5
0.16%
SQS/FDFT1
4
0.13%
SQE
4
0.13%
DET2
4
0.13%
CYP80B1
3
0.1%
XMT_MXMT_DXMT
3
0.1%
DXS
3
0.1%
HMGR
3
0.1%
ADC
2
0.07%
FLS
2
0.07%
DWF7
2
0.07%
HYD1
2
0.07%
HMGS
2
0.07%
HDR/IspH
2
0.07%
FK
1
0.03%
CPI1
1
0.03%
DWF1
1
0.03%
PMK
1
0.03%
MDS/IspF
1
0.03%
MCT/IspD
1
0.03%
DXR
1
0.03%
CMK/IspE
1
0.03%
IDI
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 310 | 18 | BAHD (128) | View species results |
| Phenylpropanoid pathway | 309 | 11 | POD (137) | View species results |
| Alkaloid pathway | 267 | 19 | NMT (38) | View species results |
| Flavonoid pathway | 162 | 8 | UFGT (81) | View species results |
| Rosmarinic acid pathway | 110 | 7 | C4H (33) | View species results |
| Steroid pathway | 69 | 11 | CAS (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1092 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 234 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Nnucmegascaffold_10002400.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Nnucmegascaffold_10003700.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Nnucmegascaffold_10004590.1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Nnucmegascaffold_10007290.1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Nnucmegascaffold_10008550.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Nnucmegascaffold_10012600.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| Nnucmegascaffold_10012890.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Nnucmegascaffold_10020060.1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Nnucmegascaffold_10025970.1 | Alkaloid | NMT | medium | pass | NMT__00062__sp_Q9SCP7_NAMT1_ARATH |
| Nnucmegascaffold_10030080.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| Nnucmegascaffold_10032420.1 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Nnucmegascaffold_10034860.1 | Alkaloid | NMT | low | borderline | NMT__00020__sp_O23372_ATXR3_ARATH |
| Nnucmegascaffold_10037160.1 | Alkaloid | NMT | low | borderline | NMT__00021__sp_O64827_SUVR5_ARATH |
| Nnucmegascaffold_10039510.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Nnucmegascaffold_10039520.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Nnucmegascaffold_10040060.1 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| Nnucmegascaffold_10044700.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Nnucmegascaffold_10045090.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| Nnucmegascaffold_10045300.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Nnucmegascaffold_10050850.1 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Nnucmegascaffold_110065380.1 | Alkaloid | NMT | medium | pass | NMT__00018__sp_I1M2U5_NAMT1_SOYBN |
| Nnucmegascaffold_110065390.1 | Alkaloid | NMT | medium | pass | NMT__00018__sp_I1M2U5_NAMT1_SOYBN |
| Nnucmegascaffold_110065960.1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Nnucmegascaffold_120068310.1 | Alkaloid | NMT | low | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| Nnucmegascaffold_1400080170.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Nnucmegascaffold_1400080180.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Nnucmegascaffold_140076790.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Nnucmegascaffold_140080040.1 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Nnucmegascaffold_1460080290.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Nnucmegascaffold_150082700.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Nnucmegascaffold_160085600.1 | Alkaloid | NMT | low | borderline | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| Nnucmegascaffold_160085610.1 | Alkaloid | NMT | low | borderline | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| Nnucmegascaffold_160085620.1 | Alkaloid | NMT | medium | pass | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Nnucmegascaffold_200131250.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Nnucmegascaffold_20094840.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Nnucmegascaffold_20098400.1 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Nnucmegascaffold_20099360.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Nnucmegascaffold_20102350.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Nnucmegascaffold_20103180.1 | Alkaloid | NMT | low | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| Nnucmegascaffold_20105760.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Nnucmegascaffold_20105770.1 | Alkaloid | NMT | low | borderline | NMT__00020__sp_O23372_ATXR3_ARATH |
| Nnucmegascaffold_20110220.1 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| Nnucmegascaffold_20111470.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Nnucmegascaffold_20117720.1 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Nnucmegascaffold_20122690.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| Nnucmegascaffold_20129380.1 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Nnucmegascaffold_20130010.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Nnucmegascaffold_30149740.1 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Nnucmegascaffold_30154560.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Nnucmegascaffold_380166110.1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |