Nelumbo nucifera (nelumbo_nucifera)
Imported from atlas release summary for Nelumbo nucifera.
1227
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1227
Candidate Genes
C4H
6.13%
BAHD
5.87%
C3'H/CYP98A
5.41%
POD
5.08%
4CL
4.23%
IFS
3.9%
UGT
3.48%
T3O
3.11%
Other Families
62.79%
More Families (94)
CYP76
94
3.08%
7DLGT
92
3.02%
UFGT
85
2.79%
F3H
76
2.49%
NMT
73
2.39%
DWF4/CYP90B1
71
2.33%
STR
68
2.23%
BR6OX2/CYP85A2
53
1.74%
PAL
51
1.67%
CODM/T6ODM
49
1.61%
F3'H/CYP75B
48
1.57%
SMT1/SMT2/SMT3
43
1.41%
TRI/TRII
40
1.31%
CAD
39
1.28%
CSE
37
1.21%
H6H
36
1.18%
SGD
36
1.18%
PYKS
35
1.15%
LAC
34
1.11%
CAS
34
1.11%
CYP71
32
1.05%
7DLH
31
1.02%
HCT
30
0.98%
T16H
28
0.92%
IFR
28
0.92%
COMT
27
0.89%
RAS
25
0.82%
CYP90D1
25
0.82%
FNS
23
0.75%
PMT
21
0.69%
G8O/G8H
20
0.66%
8HGO
20
0.66%
GS
20
0.66%
F5H/CYP84A
20
0.66%
IO
19
0.62%
GES
19
0.62%
ANR
19
0.62%
DFR
19
0.62%
TYDC_DDC
18
0.59%
LAMT
18
0.59%
CCR
18
0.59%
TPS
18
0.59%
16OMT
17
0.56%
CPD/CYP90A1
17
0.56%
COR
15
0.49%
F3'5'H/CYP75A
14
0.46%
BR6OX1/CYP85A1
14
0.46%
NCS
13
0.43%
CYP51G1
13
0.43%
GGPPS
13
0.43%
BBE
12
0.39%
SLS
12
0.39%
ANS/LDOX
10
0.33%
CPR
10
0.33%
ISY
8
0.26%
CHS
8
0.26%
TAT
8
0.26%
FPPS
8
0.26%
ODC
7
0.23%
TDC
7
0.23%
CHI
7
0.23%
CCoAOMT
7
0.23%
HPPR
7
0.23%
MVD
7
0.23%
CNMT
6
0.2%
CYP719
6
0.2%
MPO
6
0.2%
ROT3/CYP90C1
6
0.2%
SMO1/SMO2
5
0.16%
AACT
5
0.16%
HDS/IspG
5
0.16%
MVK
5
0.16%
SQS/FDFT1
4
0.13%
SQE
4
0.13%
DET2
4
0.13%
CYP80B1
3
0.1%
XMT_MXMT_DXMT
3
0.1%
DXS
3
0.1%
HMGR
3
0.1%
ADC
2
0.07%
FLS
2
0.07%
DWF7
2
0.07%
HYD1
2
0.07%
HMGS
2
0.07%
HDR/IspH
2
0.07%
FK
1
0.03%
CPI1
1
0.03%
DWF1
1
0.03%
PMK
1
0.03%
MDS/IspF
1
0.03%
MCT/IspD
1
0.03%
DXR
1
0.03%
CMK/IspE
1
0.03%
IDI
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 310 | 18 | BAHD (128) | View species results |
| Phenylpropanoid pathway | 309 | 11 | POD (137) | View species results |
| Alkaloid pathway | 267 | 19 | NMT (38) | View species results |
| Flavonoid pathway | 162 | 8 | UFGT (81) | View species results |
| Rosmarinic acid pathway | 110 | 7 | C4H (33) | View species results |
| Steroid pathway | 69 | 11 | CAS (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1092 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 234 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Nnucmegascaffold_10001210.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_10003030.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_100060430.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_10007040.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_10011070.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Nnucmegascaffold_10017230.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_10023170.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_10027960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_10035260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_110064070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_110066500.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Nnucmegascaffold_110066510.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Nnucmegascaffold_120067890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_120067930.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_150083230.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_160085520.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_190090510.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Nnucmegascaffold_20104440.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_20114180.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_20114190.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_20114210.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_20114360.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_20116540.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_20116560.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_20116580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_20120080.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Nnucmegascaffold_20121840.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_20124540.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Nnucmegascaffold_20124680.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_20129120.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_210132380.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_210132420.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_210132440.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_260136500.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_270136920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_30139880.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Nnucmegascaffold_30140430.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_30146650.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_30147060.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_30149260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_30149270.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_30149280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_30156010.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_30156040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_30162260.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_40172940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_40175970.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Nnucmegascaffold_480188330.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Nnucmegascaffold_50200410.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Nnucmegascaffold_50200690.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |