Nelumbo nucifera (nelumbo_nucifera)
Imported from atlas release summary for Nelumbo nucifera.
1585
Candidate Protein Records
1227
Pathway-Level Records
3050
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3050
Family-Level Calls
C4H
6.13%
BAHD
5.87%
C3'H/CYP98A
5.41%
POD
5.08%
4CL
4.23%
IFS
3.9%
UGT
3.48%
T3O
3.11%
Other Families
62.79%
More Families (94)
CYP76
94
3.08%
7DLGT
92
3.02%
UFGT
85
2.79%
F3H
76
2.49%
NMT
73
2.39%
DWF4/CYP90B1
71
2.33%
STR
68
2.23%
BR6OX2/CYP85A2
53
1.74%
PAL
51
1.67%
CODM/T6ODM
49
1.61%
F3'H/CYP75B
48
1.57%
SMT1/SMT2/SMT3
43
1.41%
TRI/TRII
40
1.31%
CAD
39
1.28%
CSE
37
1.21%
H6H
36
1.18%
SGD
36
1.18%
PYKS
35
1.15%
LAC
34
1.11%
CAS
34
1.11%
CYP71
32
1.05%
7DLH
31
1.02%
HCT
30
0.98%
T16H
28
0.92%
IFR
28
0.92%
COMT
27
0.89%
RAS
25
0.82%
CYP90D1
25
0.82%
FNS
23
0.75%
PMT
21
0.69%
G8O/G8H
20
0.66%
8HGO
20
0.66%
GS
20
0.66%
F5H/CYP84A
20
0.66%
IO
19
0.62%
GES
19
0.62%
ANR
19
0.62%
DFR
19
0.62%
TYDC_DDC
18
0.59%
LAMT
18
0.59%
CCR
18
0.59%
TPS
18
0.59%
16OMT
17
0.56%
CPD/CYP90A1
17
0.56%
COR
15
0.49%
F3'5'H/CYP75A
14
0.46%
BR6OX1/CYP85A1
14
0.46%
NCS
13
0.43%
CYP51G1
13
0.43%
GGPPS
13
0.43%
BBE
12
0.39%
SLS
12
0.39%
ANS/LDOX
10
0.33%
CPR
10
0.33%
ISY
8
0.26%
CHS
8
0.26%
TAT
8
0.26%
FPPS
8
0.26%
ODC
7
0.23%
TDC
7
0.23%
CHI
7
0.23%
CCoAOMT
7
0.23%
HPPR
7
0.23%
MVD
7
0.23%
CNMT
6
0.2%
CYP719
6
0.2%
MPO
6
0.2%
ROT3/CYP90C1
6
0.2%
SMO1/SMO2
5
0.16%
AACT
5
0.16%
HDS/IspG
5
0.16%
MVK
5
0.16%
SQS/FDFT1
4
0.13%
SQE
4
0.13%
DET2
4
0.13%
CYP80B1
3
0.1%
XMT_MXMT_DXMT
3
0.1%
DXS
3
0.1%
HMGR
3
0.1%
ADC
2
0.07%
FLS
2
0.07%
DWF7
2
0.07%
HYD1
2
0.07%
HMGS
2
0.07%
HDR/IspH
2
0.07%
FK
1
0.03%
CPI1
1
0.03%
DWF1
1
0.03%
PMK
1
0.03%
MDS/IspF
1
0.03%
MCT/IspD
1
0.03%
DXR
1
0.03%
CMK/IspE
1
0.03%
IDI
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 310 | 18 | BAHD (128) | View species results |
| Phenylpropanoid pathway | 309 | 11 | POD (137) | View species results |
| Alkaloid pathway | 267 | 19 | NMT (38) | View species results |
| Flavonoid pathway | 162 | 8 | UFGT (81) | View species results |
| Rosmarinic acid pathway | 110 | 7 | C4H (33) | View species results |
| Steroid pathway | 69 | 11 | CAS (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1092 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 234 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Nnucmegascaffold_40171890.1 | Alkaloid | T3O | medium | pass |
| Nnucmegascaffold_40173600.1 | Alkaloid | T3O | medium | borderline |
| Nnucmegascaffold_40177190.1 | Alkaloid | T3O | medium | pass |
| Nnucmegascaffold_40177330.1 | Alkaloid | T3O | medium | borderline |
| Nnucmegascaffold_40177760.1 | Alkaloid | T3O | medium | borderline |
| Nnucmegascaffold_40183250.1 | Alkaloid | T3O | medium | pass |
| Nnucmegascaffold_40184420.1 | Alkaloid | T3O | low | borderline |
| Nnucmegascaffold_40184430.1 | Alkaloid | T3O | low | borderline |
| Nnucmegascaffold_50191810.1 | Alkaloid | T3O | medium | borderline |
| Nnucmegascaffold_50192480.1 | Alkaloid | T3O | medium | pass |
| Nnucmegascaffold_50192630.1 | Alkaloid | T3O | medium | borderline |
| Nnucmegascaffold_50197610.1 | Alkaloid | T3O | low | borderline |
| Nnucmegascaffold_50197760.1 | Alkaloid | T3O | low | borderline |
| Nnucmegascaffold_50198970.1 | Alkaloid | T3O | medium | borderline |
| Nnucmegascaffold_50199410.1 | Alkaloid | T3O | medium | borderline |
| Nnucmegascaffold_50199540.1 | Alkaloid | T3O | medium | pass |
| Nnucmegascaffold_50208100.1 | Alkaloid | T3O | medium | pass |
| Nnucmegascaffold_60213670.1 | Alkaloid | T3O | low | borderline |
| Nnucmegascaffold_60213900.1 | Alkaloid | T3O | medium | borderline |
| Nnucmegascaffold_60215920.1 | Alkaloid | T3O | medium | borderline |
| Nnucmegascaffold_60216460.1 | Alkaloid | T3O | medium | borderline |
| Nnucmegascaffold_60219760.1 | Alkaloid | T3O | medium | pass |
| Nnucmegascaffold_60222630.1 | Alkaloid | T3O | low | borderline |
| Nnucmegascaffold_60222640.1 | Alkaloid | T3O | low | borderline |
| Nnucmegascaffold_60224000.1 | Alkaloid | T3O | medium | pass |
| Nnucmegascaffold_70231870.1 | Alkaloid | T3O | low | borderline |
| Nnucmegascaffold_70232950.1 | Alkaloid | T3O | low | borderline |
| Nnucmegascaffold_70233220.1 | Alkaloid | T3O | medium | pass |
| Nnucmegascaffold_70233230.1 | Alkaloid | T3O | low | borderline |
| Nnucmegascaffold_70233250.1 | Alkaloid | T3O | low | borderline |
| Nnucmegascaffold_70234300.1 | Alkaloid | T3O | medium | borderline |
| Nnucmegascaffold_80247180.1 | Alkaloid | T3O | medium | pass |
| Nnucmegascaffold_80251550.1 | Alkaloid | T3O | low | borderline |
| Nnucmegascaffold_80254510.1 | Alkaloid | T3O | medium | pass |
| Nnucmegascaffold_80254540.1 | Alkaloid | T3O | medium | borderline |
| Nnucmegascaffold_80255790.1 | Alkaloid | T3O | medium | borderline |
| Nnucmegascaffold_90256660.1 | Alkaloid | T3O | medium | pass |
| Nnucmegascaffold_10023530.1 | Alkaloid | TDC | low | borderline |
| Nnucmegascaffold_10023540.1 | Alkaloid | TDC | low | borderline |
| Nnucmegascaffold_10027150.1 | Alkaloid | TDC | medium | borderline |
| Nnucmegascaffold_30143690.1 | Alkaloid | TDC | medium | borderline |
| Nnucmegascaffold_60212350.1 | Alkaloid | TDC | low | borderline |
| Nnucmegascaffold_70230750.1 | Alkaloid | TDC | medium | borderline |
| Nnucmegascaffold_70231810.1 | Alkaloid | TDC | medium | borderline |
| Nnucmegascaffold_100054260.1 | Alkaloid | TRI/TRII | medium | pass |
| Nnucmegascaffold_10038230.1 | Alkaloid | TRI/TRII | low | borderline |
| Nnucmegascaffold_10042200.1 | Alkaloid | TRI/TRII | medium | pass |
| Nnucmegascaffold_10049790.1 | Alkaloid | TRI/TRII | low | borderline |
| Nnucmegascaffold_110065470.1 | Alkaloid | TRI/TRII | medium | pass |
| Nnucmegascaffold_110065480.1 | Alkaloid | TRI/TRII | medium | pass |