Nicotiana benthamiana (nicotiana_benthamiana)
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Imported from atlas release summary for Nicotiana benthamiana.
2130
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2130
Candidate Genes
C4H
5.94%
C3'H/CYP98A
5.45%
POD
5.43%
BAHD
5.26%
4CL
4.12%
CYP76
3.48%
IFS
3.24%
UGT
3.18%
Other Families
63.9%
More Families (96)
T3O
163
3.05%
F3H
162
3.03%
7DLGT
150
2.81%
UFGT
145
2.71%
NMT
136
2.55%
DWF4/CYP90B1
132
2.47%
STR
117
2.19%
F3'H/CYP75B
109
2.04%
BR6OX2/CYP85A2
102
1.91%
CODM/T6ODM
96
1.8%
TPS
96
1.8%
H6H
92
1.72%
CYP71
80
1.5%
LAC
79
1.48%
CAD
76
1.42%
GES
69
1.29%
SMT1/SMT2/SMT3
69
1.29%
CSE
66
1.24%
IFR
61
1.14%
CAS
61
1.14%
PAL
54
1.01%
GS
53
0.99%
TRI/TRII
47
0.88%
SGD
46
0.86%
SLS
44
0.82%
T16H
40
0.75%
7DLH
39
0.73%
IO
38
0.71%
G8O/G8H
38
0.71%
F3'5'H/CYP75A
37
0.69%
COMT
37
0.69%
PYKS
35
0.66%
TAT
35
0.66%
NCS
33
0.62%
CYP90D1
33
0.62%
ANR
32
0.6%
CCR
32
0.6%
F5H/CYP84A
31
0.58%
CPD/CYP90A1
31
0.58%
RAS
30
0.56%
FNS
26
0.49%
ANS/LDOX
25
0.47%
BBE
23
0.43%
CYP51G1
23
0.43%
DFR
22
0.41%
HCT
22
0.41%
PMT
20
0.37%
16OMT
19
0.36%
8HGO
19
0.36%
BR6OX1/CYP85A1
19
0.36%
CNMT
18
0.34%
FPPS
18
0.34%
MPO
16
0.3%
HPPR
16
0.3%
SQS/FDFT1
16
0.3%
LAMT
14
0.26%
CCoAOMT
14
0.26%
CPR
14
0.26%
ROT3/CYP90C1
14
0.26%
CYP80B1
13
0.24%
COR
13
0.24%
AACT
13
0.24%
CHS
11
0.21%
DET2
10
0.19%
ISY
9
0.17%
GGPPS
9
0.17%
MVK
9
0.17%
DXS
9
0.17%
TYDC_DDC
8
0.15%
CYP719
8
0.15%
CHI
8
0.15%
SMO1/SMO2
8
0.15%
XMT_MXMT_DXMT
7
0.13%
HMGS
7
0.13%
MVD
7
0.13%
SQE
6
0.11%
HDR/IspH
6
0.11%
6OMT_4OMT_SOMT
5
0.09%
DWF1
5
0.09%
MCT/IspD
5
0.09%
HMGR
5
0.09%
HDS/IspG
5
0.09%
IDI
5
0.09%
ADC
4
0.07%
TDC
4
0.07%
FLS
4
0.07%
HYD1
4
0.07%
DWF7
4
0.07%
FK
3
0.06%
DWF5
3
0.06%
PMK
3
0.06%
ODC
2
0.04%
CPI1
2
0.04%
MDS/IspF
2
0.04%
DXR
2
0.04%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 594 | 19 | BAHD (206) | View species results |
| Phenylpropanoid pathway | 549 | 11 | POD (262) | View species results |
| Alkaloid pathway | 437 | 25 | NMT (68) | View species results |
| Flavonoid pathway | 234 | 12 | UFGT (114) | View species results |
| Rosmarinic acid pathway | 202 | 7 | C4H (75) | View species results |
| Steroid pathway | 114 | 12 | CAS (41) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1961 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 333 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| nicotiana_benthamiana_Niben261Chr01g0767002.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr01g0767004.1 | Alkaloid | GES | low | borderline | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr02g0666010.1 | Alkaloid | GES | low | borderline | GES__00011__sp_R9QMR5_ATERP_PINBN |
| nicotiana_benthamiana_Niben261Chr03g0205002.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr03g0301003.1 | Alkaloid | GES | medium | pass | GES__00006__sp_Q4JHG3_GRNLC_PERFH |
| nicotiana_benthamiana_Niben261Chr03g0304003.1 | Alkaloid | GES | medium | pass | GES__00005__sp_Q308N0_GRNL6_PERFR |
| nicotiana_benthamiana_Niben261Chr03g0307006.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| nicotiana_benthamiana_Niben261Chr03g1488001.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr03g1489003.1 | Alkaloid | GES | low | borderline | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr04g0223004.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr04g0406001.1 | Alkaloid | GES | low | borderline | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| nicotiana_benthamiana_Niben261Chr04g0409001.1 | Alkaloid | GES | low | borderline | GES__00010__sp_Q93YV0_GES_ARATH |
| nicotiana_benthamiana_Niben261Chr04g0472002.1 | Alkaloid | GES | medium | pass | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| nicotiana_benthamiana_Niben261Chr04g1506021.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr04g1579008.1 | Alkaloid | GES | low | borderline | GES__00010__sp_Q93YV0_GES_ARATH |
| nicotiana_benthamiana_Niben261Chr05g0948009.1 | Alkaloid | GES | medium | pass | GES__00005__sp_Q308N0_GRNL6_PERFR |
| nicotiana_benthamiana_Niben261Chr06g0275006.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr06g0276010.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr06g0276012.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr06g0283003.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr06g0283005.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr06g0294004.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr06g0299007.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr06g0299008.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr06g0299009.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr06g0299010.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr06g0299011.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| nicotiana_benthamiana_Niben261Chr06g0299017.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr06g0299019.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr06g0301001.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| nicotiana_benthamiana_Niben261Chr07g1055005.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr07g1055007.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr07g1368007.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| nicotiana_benthamiana_Niben261Chr08g1160006.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| nicotiana_benthamiana_Niben261Chr08g1160007.1 | Alkaloid | GES | medium | pass | GES__00002__sp_C0KWV4_GRNLG_PERFH |
| nicotiana_benthamiana_Niben261Chr09g0053001.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr09g0917007.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr09g0917011.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr09g1213001.1 | Alkaloid | GES | medium | pass | GES__00002__sp_C0KWV4_GRNLG_PERFH |
| nicotiana_benthamiana_Niben261Chr09g1213012.1 | Alkaloid | GES | medium | pass | GES__00006__sp_Q4JHG3_GRNLC_PERFH |
| nicotiana_benthamiana_Niben261Chr10g0513003.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr10g0513007.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr10g0633008.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| nicotiana_benthamiana_Niben261Chr11g0144001.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| nicotiana_benthamiana_Niben261Chr11g0159004.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr13g0600001.1 | Alkaloid | GES | low | borderline | GES__00011__sp_R9QMR5_ATERP_PINBN |
| nicotiana_benthamiana_Niben261Chr13g0989001.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr14g1238001.1 | Alkaloid | GES | medium | pass | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| nicotiana_benthamiana_Niben261Chr14g1255002.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| nicotiana_benthamiana_Niben261Chr16g0346003.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |