PlantSME Plant secondary metabolism enzyme database

Nicotiana benthamiana (nicotiana_benthamiana)

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Imported from atlas release summary for Nicotiana benthamiana.

2130
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.89% Phenylpropanoid pathway 25.77% Alkaloid pathway 20.52% Flavonoid pathway 10.99% Rosmarinic acid pathway 9.48% Steroid pathway 5.35%
Family Distribution
C4H 5.94% C3'H/CYP98A 5.45% POD 5.43% BAHD 5.26% 4CL 4.12% CYP76 3.48% IFS 3.24% UGT 3.18%
Other Families 63.9%
More Families (96)
T3O 163 3.05% F3H 162 3.03% 7DLGT 150 2.81% UFGT 145 2.71% NMT 136 2.55% DWF4/CYP90B1 132 2.47% STR 117 2.19% F3'H/CYP75B 109 2.04% BR6OX2/CYP85A2 102 1.91% CODM/T6ODM 96 1.8% TPS 96 1.8% H6H 92 1.72% CYP71 80 1.5% LAC 79 1.48% CAD 76 1.42% GES 69 1.29% SMT1/SMT2/SMT3 69 1.29% CSE 66 1.24% IFR 61 1.14% CAS 61 1.14% PAL 54 1.01% GS 53 0.99% TRI/TRII 47 0.88% SGD 46 0.86% SLS 44 0.82% T16H 40 0.75% 7DLH 39 0.73% IO 38 0.71% G8O/G8H 38 0.71% F3'5'H/CYP75A 37 0.69% COMT 37 0.69% PYKS 35 0.66% TAT 35 0.66% NCS 33 0.62% CYP90D1 33 0.62% ANR 32 0.6% CCR 32 0.6% F5H/CYP84A 31 0.58% CPD/CYP90A1 31 0.58% RAS 30 0.56% FNS 26 0.49% ANS/LDOX 25 0.47% BBE 23 0.43% CYP51G1 23 0.43% DFR 22 0.41% HCT 22 0.41% PMT 20 0.37% 16OMT 19 0.36% 8HGO 19 0.36% BR6OX1/CYP85A1 19 0.36% CNMT 18 0.34% FPPS 18 0.34% MPO 16 0.3% HPPR 16 0.3% SQS/FDFT1 16 0.3% LAMT 14 0.26% CCoAOMT 14 0.26% CPR 14 0.26% ROT3/CYP90C1 14 0.26% CYP80B1 13 0.24% COR 13 0.24% AACT 13 0.24% CHS 11 0.21% DET2 10 0.19% ISY 9 0.17% GGPPS 9 0.17% MVK 9 0.17% DXS 9 0.17% TYDC_DDC 8 0.15% CYP719 8 0.15% CHI 8 0.15% SMO1/SMO2 8 0.15% XMT_MXMT_DXMT 7 0.13% HMGS 7 0.13% MVD 7 0.13% SQE 6 0.11% HDR/IspH 6 0.11% 6OMT_4OMT_SOMT 5 0.09% DWF1 5 0.09% MCT/IspD 5 0.09% HMGR 5 0.09% HDS/IspG 5 0.09% IDI 5 0.09% ADC 4 0.07% TDC 4 0.07% FLS 4 0.07% HYD1 4 0.07% DWF7 4 0.07% FK 3 0.06% DWF5 3 0.06% PMK 3 0.06% ODC 2 0.04% CPI1 2 0.04% MDS/IspF 2 0.04% DXR 2 0.04% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 594 19 BAHD (206) View species results
Phenylpropanoid pathway 549 11 POD (262) View species results
Alkaloid pathway 437 25 NMT (68) View species results
Flavonoid pathway 234 12 UFGT (114) View species results
Rosmarinic acid pathway 202 7 C4H (75) View species results
Steroid pathway 114 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1961 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 333 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
nicotiana_benthamiana_Niben261Chr02g0757006.1 Alkaloid PMT medium borderline
nicotiana_benthamiana_Niben261Chr03g1481014.1 Alkaloid PMT medium pass
nicotiana_benthamiana_Niben261Chr06g0689005.1 Alkaloid PMT low borderline
nicotiana_benthamiana_Niben261Chr06g0770008.1 Alkaloid PMT medium borderline
nicotiana_benthamiana_Niben261Chr07g0372005.1 Alkaloid PMT medium pass
nicotiana_benthamiana_Niben261Chr08g0138001.1 Alkaloid PMT low borderline
nicotiana_benthamiana_Niben261Chr08g0356004.1 Alkaloid PMT low borderline
nicotiana_benthamiana_Niben261Chr08g0430007.1 Alkaloid PMT medium borderline
nicotiana_benthamiana_Niben261Chr10g0189006.1 Alkaloid PMT medium pass
nicotiana_benthamiana_Niben261Chr11g0168006.1 Alkaloid PMT low borderline
nicotiana_benthamiana_Niben261Chr11g1180008.1 Alkaloid PMT medium borderline
nicotiana_benthamiana_Niben261Chr12g0761006.1 Alkaloid PMT medium pass
nicotiana_benthamiana_Niben261Chr13g0326025.1 Alkaloid PMT medium pass
nicotiana_benthamiana_Niben261Chr16g0604001.1 Alkaloid PMT medium borderline
nicotiana_benthamiana_Niben261Chr16g0604002.1 Alkaloid PMT medium borderline
nicotiana_benthamiana_Niben261Chr16g0604003.1 Alkaloid PMT medium borderline
nicotiana_benthamiana_Niben261Chr17g0902008.1 Alkaloid PMT medium pass
nicotiana_benthamiana_Niben261Chr19g0066030.1 Alkaloid PMT medium pass
nicotiana_benthamiana_Niben261Chr19g0257004.1 Alkaloid PMT medium pass
nicotiana_benthamiana_Niben261Chr19g0915002.1 Alkaloid PMT medium borderline