Nicotiana benthamiana (nicotiana_benthamiana)
/
Imported from atlas release summary for Nicotiana benthamiana.
2130
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2130
Candidate Genes
C4H
5.94%
C3'H/CYP98A
5.45%
POD
5.43%
BAHD
5.26%
4CL
4.12%
CYP76
3.48%
IFS
3.24%
UGT
3.18%
Other Families
63.9%
More Families (96)
T3O
163
3.05%
F3H
162
3.03%
7DLGT
150
2.81%
UFGT
145
2.71%
NMT
136
2.55%
DWF4/CYP90B1
132
2.47%
STR
117
2.19%
F3'H/CYP75B
109
2.04%
BR6OX2/CYP85A2
102
1.91%
CODM/T6ODM
96
1.8%
TPS
96
1.8%
H6H
92
1.72%
CYP71
80
1.5%
LAC
79
1.48%
CAD
76
1.42%
GES
69
1.29%
SMT1/SMT2/SMT3
69
1.29%
CSE
66
1.24%
IFR
61
1.14%
CAS
61
1.14%
PAL
54
1.01%
GS
53
0.99%
TRI/TRII
47
0.88%
SGD
46
0.86%
SLS
44
0.82%
T16H
40
0.75%
7DLH
39
0.73%
IO
38
0.71%
G8O/G8H
38
0.71%
F3'5'H/CYP75A
37
0.69%
COMT
37
0.69%
PYKS
35
0.66%
TAT
35
0.66%
NCS
33
0.62%
CYP90D1
33
0.62%
ANR
32
0.6%
CCR
32
0.6%
F5H/CYP84A
31
0.58%
CPD/CYP90A1
31
0.58%
RAS
30
0.56%
FNS
26
0.49%
ANS/LDOX
25
0.47%
BBE
23
0.43%
CYP51G1
23
0.43%
DFR
22
0.41%
HCT
22
0.41%
PMT
20
0.37%
16OMT
19
0.36%
8HGO
19
0.36%
BR6OX1/CYP85A1
19
0.36%
CNMT
18
0.34%
FPPS
18
0.34%
MPO
16
0.3%
HPPR
16
0.3%
SQS/FDFT1
16
0.3%
LAMT
14
0.26%
CCoAOMT
14
0.26%
CPR
14
0.26%
ROT3/CYP90C1
14
0.26%
CYP80B1
13
0.24%
COR
13
0.24%
AACT
13
0.24%
CHS
11
0.21%
DET2
10
0.19%
ISY
9
0.17%
GGPPS
9
0.17%
MVK
9
0.17%
DXS
9
0.17%
TYDC_DDC
8
0.15%
CYP719
8
0.15%
CHI
8
0.15%
SMO1/SMO2
8
0.15%
XMT_MXMT_DXMT
7
0.13%
HMGS
7
0.13%
MVD
7
0.13%
SQE
6
0.11%
HDR/IspH
6
0.11%
6OMT_4OMT_SOMT
5
0.09%
DWF1
5
0.09%
MCT/IspD
5
0.09%
HMGR
5
0.09%
HDS/IspG
5
0.09%
IDI
5
0.09%
ADC
4
0.07%
TDC
4
0.07%
FLS
4
0.07%
HYD1
4
0.07%
DWF7
4
0.07%
FK
3
0.06%
DWF5
3
0.06%
PMK
3
0.06%
ODC
2
0.04%
CPI1
2
0.04%
MDS/IspF
2
0.04%
DXR
2
0.04%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 594 | 19 | BAHD (206) | View species results |
| Phenylpropanoid pathway | 549 | 11 | POD (262) | View species results |
| Alkaloid pathway | 437 | 25 | NMT (68) | View species results |
| Flavonoid pathway | 234 | 12 | UFGT (114) | View species results |
| Rosmarinic acid pathway | 202 | 7 | C4H (75) | View species results |
| Steroid pathway | 114 | 12 | CAS (41) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1961 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 333 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SGD
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| nicotiana_benthamiana_Niben261Chr01g0333003.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr01g0333004.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr01g0335008.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr01g0380002.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr01g1275004.1 | Alkaloid | SGD | low | borderline |
| nicotiana_benthamiana_Niben261Chr02g0552001.1 | Alkaloid | SGD | low | borderline |
| nicotiana_benthamiana_Niben261Chr02g0899023.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr03g1002005.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr04g0430007.1 | Alkaloid | SGD | low | borderline |
| nicotiana_benthamiana_Niben261Chr04g0500003.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr04g0504003.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr04g0505003.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr04g0865005.1 | Alkaloid | SGD | low | borderline |
| nicotiana_benthamiana_Niben261Chr04g1529001.1 | Alkaloid | SGD | low | borderline |
| nicotiana_benthamiana_Niben261Chr04g1529002.1 | Alkaloid | SGD | low | borderline |
| nicotiana_benthamiana_Niben261Chr04g1594005.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr05g0519007.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr06g0158010.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr06g1154012.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr06g1154013.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr07g1238007.1 | Alkaloid | SGD | low | borderline |
| nicotiana_benthamiana_Niben261Chr07g1376012.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr07g1376020.1 | Alkaloid | SGD | low | borderline |
| nicotiana_benthamiana_Niben261Chr08g0105021.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr09g0439005.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr09g0651008.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr10g0244017.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr11g1180001.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr12g0609008.1 | Alkaloid | SGD | low | borderline |
| nicotiana_benthamiana_Niben261Chr12g0610001.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr12g0638009.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr12g0638011.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr12g1491003.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr13g0584001.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr13g0584014.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr16g0357004.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr16g0586001.1 | Alkaloid | SGD | low | borderline |
| nicotiana_benthamiana_Niben261Chr17g0179003.1 | Alkaloid | SGD | low | borderline |
| nicotiana_benthamiana_Niben261Chr17g0588006.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr17g0889009.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr17g1008010.1 | Alkaloid | SGD | low | borderline |
| nicotiana_benthamiana_Niben261Chr17g1072027.1 | Alkaloid | SGD | medium | pass |
| nicotiana_benthamiana_Niben261Chr18g0422013.1 | Alkaloid | SGD | low | borderline |
| nicotiana_benthamiana_Niben261Chr18g1056002.1 | Alkaloid | SGD | low | borderline |
| nicotiana_benthamiana_Niben261Chr19g1062006.1 | Alkaloid | SGD | low | borderline |
| nicotiana_benthamiana_Niben261Scf00494g0000001.1 | Alkaloid | SGD | low | borderline |