PlantSME Plant secondary metabolism enzyme database

Oryza meridionalis (oryza_meridionalis)

Imported from atlas release summary for Oryza meridionalis.

1703
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.12% Alkaloid pathway 22.84% Phenylpropanoid pathway 15.5% Flavonoid pathway 13.98% Steroid pathway 8.57% Rosmarinic acid pathway 7.99%
Family Distribution
BAHD 6.53% C4H 6.11% C3'H/CYP98A 6.0% UGT 4.06% 4CL 3.84% UFGT 3.54% 7DLGT 3.52% T3O 3.31%
Other Families 63.09%
More Families (96)
CYP76 143 3.05% IFS 141 3.01% POD 129 2.75% F3'H/CYP75B 119 2.54% NMT 112 2.39% DWF4/CYP90B1 103 2.2% SMT1/SMT2/SMT3 95 2.03% F3H 94 2.01% BR6OX2/CYP85A2 94 2.01% STR 91 1.94% CAD 78 1.67% CYP71 77 1.64% SGD 64 1.37% CODM/T6ODM 64 1.37% TPS 61 1.3% GES 58 1.24% CAS 57 1.22% G8O/G8H 49 1.05% TRI/TRII 47 1.0% IFR 47 1.0% SLS 46 0.98% PYKS 41 0.88% CSE 41 0.88% FNS 40 0.85% LAC 39 0.83% ANR 38 0.81% RAS 38 0.81% CYP90D1 38 0.81% H6H 37 0.79% 8HGO 36 0.77% CCR 36 0.77% PAL 33 0.7% PMT 32 0.68% T16H 31 0.66% CPD/CYP90A1 31 0.66% HCT 30 0.64% F5H/CYP84A 29 0.62% COMT 29 0.62% NCS 28 0.6% GS 27 0.58% F3'5'H/CYP75A 27 0.58% DFR 26 0.56% CHS 24 0.51% 16OMT 23 0.49% CYP51G1 23 0.49% 7DLH 21 0.45% BBE 20 0.43% CNMT 19 0.41% COR 19 0.41% SQS/FDFT1 19 0.41% CPR 17 0.36% IO 16 0.34% BR6OX1/CYP85A1 15 0.32% LAMT 14 0.3% MVK 13 0.28% ANS/LDOX 12 0.26% CCoAOMT 12 0.26% CYP719 11 0.23% CYP80B1 11 0.23% TAT 11 0.23% FPPS 11 0.23% MPO 10 0.21% XMT_MXMT_DXMT 10 0.21% GGPPS 10 0.21% FK 9 0.19% ROT3/CYP90C1 9 0.19% SMO1/SMO2 9 0.19% CMK/IspE 9 0.19% MVD 9 0.19% TYDC_DDC 8 0.17% HPPR 8 0.17% FLS 6 0.13% CHI 6 0.13% HMGR 6 0.13% HMGS 6 0.13% TDC 4 0.09% 6OMT_4OMT_SOMT 4 0.09% AACT 4 0.09% MCT/IspD 4 0.09% DXS 4 0.09% SQE 3 0.06% HDS/IspG 3 0.06% HDR/IspH 3 0.06% IDI 3 0.06% ISY 2 0.04% ADC 2 0.04% ODC 2 0.04% DET2 2 0.04% DWF1 2 0.04% DWF5 2 0.04% HYD1 2 0.04% CPI1 2 0.04% MDS/IspF 2 0.04% CYP80F1 1 0.02% DWF7 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 530 18 BAHD (211) View species results
Alkaloid pathway 389 26 7DLGT (56) View species results
Phenylpropanoid pathway 264 13 POD (96) View species results
Flavonoid pathway 238 12 UFGT (147) View species results
Steroid pathway 146 13 SMT1/SMT2/SMT3 (57) View species results
Rosmarinic acid pathway 136 7 C4H (60) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1757 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
Reset
Gene Pathway Family Confidence Status Best Target
OMERI01G34210.1 Alkaloid COR medium pass COR__00003__sp_Q9SQ68_COR13_PAPSO
OMERI02G02490.1 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
OMERI03G09100.1 Alkaloid COR medium pass COR__00005__sp_Q9SQ70_COR11_PAPSO
OMERI04G02540.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
OMERI04G12730.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
OMERI04G12740.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
OMERI04G12750.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
OMERI04G12760.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
OMERI05G16540.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
OMERI05G16550.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
OMERI05G17560.2 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
OMERI07G01280.2 Alkaloid COR low borderline COR__00005__sp_Q9SQ70_COR11_PAPSO
OMERI10G00590.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
OMERI10G00610.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
OMERI10G00640.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
OMERI10G00650.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
OMERI10G00650.2 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
OMERI10G00650.3 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
OMERI10G00650.4 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO