Oryza meridionalis (oryza_meridionalis)
Imported from atlas release summary for Oryza meridionalis.
1703
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1703
Candidate Genes
BAHD
6.53%
C4H
6.11%
C3'H/CYP98A
6.0%
UGT
4.06%
4CL
3.84%
UFGT
3.54%
7DLGT
3.52%
T3O
3.31%
Other Families
63.09%
More Families (96)
CYP76
143
3.05%
IFS
141
3.01%
POD
129
2.75%
F3'H/CYP75B
119
2.54%
NMT
112
2.39%
DWF4/CYP90B1
103
2.2%
SMT1/SMT2/SMT3
95
2.03%
F3H
94
2.01%
BR6OX2/CYP85A2
94
2.01%
STR
91
1.94%
CAD
78
1.67%
CYP71
77
1.64%
SGD
64
1.37%
CODM/T6ODM
64
1.37%
TPS
61
1.3%
GES
58
1.24%
CAS
57
1.22%
G8O/G8H
49
1.05%
TRI/TRII
47
1.0%
IFR
47
1.0%
SLS
46
0.98%
PYKS
41
0.88%
CSE
41
0.88%
FNS
40
0.85%
LAC
39
0.83%
ANR
38
0.81%
RAS
38
0.81%
CYP90D1
38
0.81%
H6H
37
0.79%
8HGO
36
0.77%
CCR
36
0.77%
PAL
33
0.7%
PMT
32
0.68%
T16H
31
0.66%
CPD/CYP90A1
31
0.66%
HCT
30
0.64%
F5H/CYP84A
29
0.62%
COMT
29
0.62%
NCS
28
0.6%
GS
27
0.58%
F3'5'H/CYP75A
27
0.58%
DFR
26
0.56%
CHS
24
0.51%
16OMT
23
0.49%
CYP51G1
23
0.49%
7DLH
21
0.45%
BBE
20
0.43%
CNMT
19
0.41%
COR
19
0.41%
SQS/FDFT1
19
0.41%
CPR
17
0.36%
IO
16
0.34%
BR6OX1/CYP85A1
15
0.32%
LAMT
14
0.3%
MVK
13
0.28%
ANS/LDOX
12
0.26%
CCoAOMT
12
0.26%
CYP719
11
0.23%
CYP80B1
11
0.23%
TAT
11
0.23%
FPPS
11
0.23%
MPO
10
0.21%
XMT_MXMT_DXMT
10
0.21%
GGPPS
10
0.21%
FK
9
0.19%
ROT3/CYP90C1
9
0.19%
SMO1/SMO2
9
0.19%
CMK/IspE
9
0.19%
MVD
9
0.19%
TYDC_DDC
8
0.17%
HPPR
8
0.17%
FLS
6
0.13%
CHI
6
0.13%
HMGR
6
0.13%
HMGS
6
0.13%
TDC
4
0.09%
6OMT_4OMT_SOMT
4
0.09%
AACT
4
0.09%
MCT/IspD
4
0.09%
DXS
4
0.09%
SQE
3
0.06%
HDS/IspG
3
0.06%
HDR/IspH
3
0.06%
IDI
3
0.06%
ISY
2
0.04%
ADC
2
0.04%
ODC
2
0.04%
DET2
2
0.04%
DWF1
2
0.04%
DWF5
2
0.04%
HYD1
2
0.04%
CPI1
2
0.04%
MDS/IspF
2
0.04%
CYP80F1
1
0.02%
DWF7
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 530 | 18 | BAHD (211) | View species results |
| Alkaloid pathway | 389 | 26 | 7DLGT (56) | View species results |
| Phenylpropanoid pathway | 264 | 13 | POD (96) | View species results |
| Flavonoid pathway | 238 | 12 | UFGT (147) | View species results |
| Steroid pathway | 146 | 13 | SMT1/SMT2/SMT3 (57) | View species results |
| Rosmarinic acid pathway | 136 | 7 | C4H (60) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1757 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 374 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| OMERI01G05630.1 | Alkaloid | T3O | medium | pass |
| OMERI01G05640.1 | Alkaloid | T3O | medium | pass |
| OMERI01G08020.1 | Alkaloid | T3O | medium | borderline |
| OMERI01G14700.1 | Alkaloid | T3O | medium | borderline |
| OMERI01G17570.1 | Alkaloid | T3O | medium | borderline |
| OMERI01G25630.1 | Alkaloid | T3O | medium | borderline |
| OMERI01G31570.1 | Alkaloid | T3O | medium | pass |
| OMERI01G31570.2 | Alkaloid | T3O | medium | pass |
| OMERI01G34640.1 | Alkaloid | T3O | low | borderline |
| OMERI01G34870.1 | Alkaloid | T3O | medium | pass |
| OMERI01G40850.1 | Alkaloid | T3O | medium | pass |
| OMERI01G41240.1 | Alkaloid | T3O | medium | borderline |
| OMERI01G41250.1 | Alkaloid | T3O | medium | pass |
| OMERI01G41270.1 | Alkaloid | T3O | low | borderline |
| OMERI02G00300.1 | Alkaloid | T3O | low | borderline |
| OMERI02G07300.1 | Alkaloid | T3O | medium | borderline |
| OMERI02G07330.1 | Alkaloid | T3O | medium | borderline |
| OMERI02G07340.1 | Alkaloid | T3O | medium | borderline |
| OMERI02G07360.1 | Alkaloid | T3O | medium | borderline |
| OMERI02G07370.1 | Alkaloid | T3O | medium | pass |
| OMERI02G07610.2 | Alkaloid | T3O | medium | borderline |
| OMERI02G07650.1 | Alkaloid | T3O | medium | borderline |
| OMERI02G10050.1 | Alkaloid | T3O | medium | pass |
| OMERI02G17470.1 | Alkaloid | T3O | medium | borderline |
| OMERI02G17530.1 | Alkaloid | T3O | medium | borderline |
| OMERI02G17530.2 | Alkaloid | T3O | medium | borderline |
| OMERI02G18930.1 | Alkaloid | T3O | medium | borderline |
| OMERI02G18930.2 | Alkaloid | T3O | medium | borderline |
| OMERI02G20870.1 | Alkaloid | T3O | medium | borderline |
| OMERI02G20890.1 | Alkaloid | T3O | medium | borderline |
| OMERI02G20910.1 | Alkaloid | T3O | medium | borderline |
| OMERI02G20920.1 | Alkaloid | T3O | medium | borderline |
| OMERI02G22350.1 | Alkaloid | T3O | medium | pass |
| OMERI02G22600.1 | Alkaloid | T3O | medium | borderline |
| OMERI02G26350.1 | Alkaloid | T3O | low | borderline |
| OMERI02G26900.1 | Alkaloid | T3O | low | borderline |
| OMERI02G28230.1 | Alkaloid | T3O | medium | pass |
| OMERI02G35150.2 | Alkaloid | T3O | medium | pass |
| OMERI02G35150.5 | Alkaloid | T3O | medium | pass |
| OMERI02G35150.6 | Alkaloid | T3O | medium | pass |
| OMERI02G35700.1 | Alkaloid | T3O | medium | pass |
| OMERI03G02970.1 | Alkaloid | T3O | medium | pass |
| OMERI03G03070.1 | Alkaloid | T3O | low | borderline |
| OMERI03G03090.1 | Alkaloid | T3O | low | borderline |
| OMERI03G03100.1 | Alkaloid | T3O | low | borderline |
| OMERI03G03110.1 | Alkaloid | T3O | low | borderline |
| OMERI03G03130.1 | Alkaloid | T3O | medium | pass |
| OMERI03G04830.1 | Alkaloid | T3O | low | borderline |
| OMERI03G08610.1 | Alkaloid | T3O | medium | pass |
| OMERI03G09790.1 | Alkaloid | T3O | medium | borderline |