Oryza meridionalis (oryza_meridionalis)
Imported from atlas release summary for Oryza meridionalis.
2291
Candidate Protein Records
1703
Pathway-Level Records
4684
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4684
Family-Level Calls
BAHD
6.53%
C4H
6.11%
C3'H/CYP98A
6.0%
UGT
4.06%
4CL
3.84%
UFGT
3.54%
7DLGT
3.52%
T3O
3.31%
Other Families
63.09%
More Families (96)
CYP76
143
3.05%
IFS
141
3.01%
POD
129
2.75%
F3'H/CYP75B
119
2.54%
NMT
112
2.39%
DWF4/CYP90B1
103
2.2%
SMT1/SMT2/SMT3
95
2.03%
F3H
94
2.01%
BR6OX2/CYP85A2
94
2.01%
STR
91
1.94%
CAD
78
1.67%
CYP71
77
1.64%
SGD
64
1.37%
CODM/T6ODM
64
1.37%
TPS
61
1.3%
GES
58
1.24%
CAS
57
1.22%
G8O/G8H
49
1.05%
TRI/TRII
47
1.0%
IFR
47
1.0%
SLS
46
0.98%
PYKS
41
0.88%
CSE
41
0.88%
FNS
40
0.85%
LAC
39
0.83%
ANR
38
0.81%
RAS
38
0.81%
CYP90D1
38
0.81%
H6H
37
0.79%
8HGO
36
0.77%
CCR
36
0.77%
PAL
33
0.7%
PMT
32
0.68%
T16H
31
0.66%
CPD/CYP90A1
31
0.66%
HCT
30
0.64%
F5H/CYP84A
29
0.62%
COMT
29
0.62%
NCS
28
0.6%
GS
27
0.58%
F3'5'H/CYP75A
27
0.58%
DFR
26
0.56%
CHS
24
0.51%
16OMT
23
0.49%
CYP51G1
23
0.49%
7DLH
21
0.45%
BBE
20
0.43%
CNMT
19
0.41%
COR
19
0.41%
SQS/FDFT1
19
0.41%
CPR
17
0.36%
IO
16
0.34%
BR6OX1/CYP85A1
15
0.32%
LAMT
14
0.3%
MVK
13
0.28%
ANS/LDOX
12
0.26%
CCoAOMT
12
0.26%
CYP719
11
0.23%
CYP80B1
11
0.23%
TAT
11
0.23%
FPPS
11
0.23%
MPO
10
0.21%
XMT_MXMT_DXMT
10
0.21%
GGPPS
10
0.21%
FK
9
0.19%
ROT3/CYP90C1
9
0.19%
SMO1/SMO2
9
0.19%
CMK/IspE
9
0.19%
MVD
9
0.19%
TYDC_DDC
8
0.17%
HPPR
8
0.17%
FLS
6
0.13%
CHI
6
0.13%
HMGR
6
0.13%
HMGS
6
0.13%
TDC
4
0.09%
6OMT_4OMT_SOMT
4
0.09%
AACT
4
0.09%
MCT/IspD
4
0.09%
DXS
4
0.09%
SQE
3
0.06%
HDS/IspG
3
0.06%
HDR/IspH
3
0.06%
IDI
3
0.06%
ISY
2
0.04%
ADC
2
0.04%
ODC
2
0.04%
DET2
2
0.04%
DWF1
2
0.04%
DWF5
2
0.04%
HYD1
2
0.04%
CPI1
2
0.04%
MDS/IspF
2
0.04%
CYP80F1
1
0.02%
DWF7
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 530 | 18 | BAHD (211) | View species results |
| Alkaloid pathway | 389 | 26 | 7DLGT (56) | View species results |
| Phenylpropanoid pathway | 264 | 13 | POD (96) | View species results |
| Flavonoid pathway | 238 | 12 | UFGT (147) | View species results |
| Steroid pathway | 146 | 13 | SMT1/SMT2/SMT3 (57) | View species results |
| Rosmarinic acid pathway | 136 | 7 | C4H (60) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1757 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 374 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| OMERI04G15650.7 | Alkaloid | SGD | medium | pass |
| OMERI04G15670.1 | Alkaloid | SGD | medium | pass |
| OMERI04G15670.2 | Alkaloid | SGD | medium | pass |
| OMERI04G15670.3 | Alkaloid | SGD | medium | pass |
| OMERI05G12150.1 | Alkaloid | SGD | low | borderline |
| OMERI05G12150.2 | Alkaloid | SGD | medium | pass |
| OMERI05G12150.3 | Alkaloid | SGD | medium | pass |
| OMERI05G12150.4 | Alkaloid | SGD | medium | pass |
| OMERI05G12150.5 | Alkaloid | SGD | medium | pass |
| OMERI05G12160.1 | Alkaloid | SGD | medium | pass |
| OMERI05G12160.2 | Alkaloid | SGD | medium | pass |
| OMERI05G12160.3 | Alkaloid | SGD | medium | pass |
| OMERI05G12180.1 | Alkaloid | SGD | medium | pass |
| OMERI05G12180.2 | Alkaloid | SGD | medium | pass |
| OMERI05G12180.3 | Alkaloid | SGD | medium | pass |
| OMERI05G12180.4 | Alkaloid | SGD | medium | pass |
| OMERI05G12200.1 | Alkaloid | SGD | medium | pass |
| OMERI07G21290.1 | Alkaloid | SGD | low | borderline |
| OMERI08G01210.1 | Alkaloid | SGD | medium | pass |
| OMERI08G01210.2 | Alkaloid | SGD | medium | pass |
| OMERI08G01210.3 | Alkaloid | SGD | medium | pass |
| OMERI08G01220.1 | Alkaloid | SGD | medium | pass |
| OMERI08G01220.2 | Alkaloid | SGD | medium | pass |
| OMERI08G01220.3 | Alkaloid | SGD | medium | pass |
| OMERI09G11490.1 | Alkaloid | SGD | medium | pass |
| OMERI09G11500.1 | Alkaloid | SGD | medium | pass |
| OMERI09G11900.1 | Alkaloid | SGD | low | borderline |
| OMERI09G11900.2 | Alkaloid | SGD | medium | pass |
| OMERI09G11900.3 | Alkaloid | SGD | low | borderline |
| OMERI09G11900.4 | Alkaloid | SGD | medium | pass |
| OMERI10G13860.1 | Alkaloid | SGD | medium | pass |
| OMERI11G04240.1 | Alkaloid | SGD | medium | pass |
| OMERI11G18920.1 | Alkaloid | SGD | low | borderline |
| OMERI11G18920.2 | Alkaloid | SGD | low | borderline |
| OMERI11G18920.3 | Alkaloid | SGD | low | borderline |
| OMERI11G18920.4 | Alkaloid | SGD | low | borderline |
| OMERI11G18920.5 | Alkaloid | SGD | low | borderline |
| OMERI12G06880.1 | Alkaloid | SGD | medium | pass |
| OMERI01G13370.1 | Alkaloid | SLS | medium | borderline |
| OMERI01G15060.1 | Alkaloid | SLS | medium | borderline |
| OMERI01G15060.2 | Alkaloid | SLS | medium | borderline |
| OMERI01G20130.1 | Alkaloid | SLS | medium | borderline |
| OMERI01G20130.2 | Alkaloid | SLS | medium | borderline |
| OMERI01G20130.3 | Alkaloid | SLS | medium | borderline |
| OMERI01G20130.4 | Alkaloid | SLS | medium | borderline |
| OMERI01G21510.1 | Alkaloid | SLS | medium | borderline |
| OMERI01G21520.1 | Alkaloid | SLS | medium | borderline |
| OMERI01G21520.2 | Alkaloid | SLS | medium | borderline |
| OMERI01G21520.3 | Alkaloid | SLS | medium | borderline |
| OMERI01G21540.1 | Alkaloid | SLS | medium | borderline |