PlantSME Plant secondary metabolism enzyme database

Penium margaritaceum (penium_margaritaceum)

Imported from atlas release summary for Penium margaritaceum.

642
Candidate Genes
96
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Current group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 28.97% Terpenoid pathway 24.14% Alkaloid pathway 22.74% Steroid pathway 13.24% Rosmarinic acid pathway 6.23% Flavonoid pathway 4.67%
Family Distribution
CSE 6.91% BAHD 6.69% POD 6.63% 4CL 5.9% C4H 4.89% C3'H/CYP98A 4.67% NMT 3.99% STR 3.2%
Other Families 57.11%
More Families (88)
IFR 49 2.75% DWF4/CYP90B1 48 2.7% IFS 45 2.53% CYP76 43 2.42% SLS 37 2.08% CYP71 37 2.08% BR6OX2/CYP85A2 35 1.97% T3O 27 1.52% F3'H/CYP75B 27 1.52% TRI/TRII 25 1.41% CYP719 24 1.35% GS 24 1.35% CAS 24 1.35% PYKS 23 1.29% SMT1/SMT2/SMT3 23 1.29% COR 22 1.24% CNMT 20 1.12% CPD/CYP90A1 18 1.01% ANR 17 0.96% LAC 17 0.96% SGD 16 0.9% FNS 16 0.9% SQS/FDFT1 16 0.9% G8O/G8H 15 0.84% ODC 14 0.79% CPR 13 0.73% FPPS 13 0.73% AACT 13 0.73% F3'5'H/CYP75A 12 0.67% CHS 11 0.62% CAD 11 0.62% MVK 11 0.62% NCS 10 0.56% TAT 10 0.56% HPPR 9 0.51% 7DLH 8 0.45% F3H 8 0.45% CCR 8 0.45% SMO1/SMO2 8 0.45% DET2 8 0.45% HDS/IspG 8 0.45% HMGR 8 0.45% H6H 7 0.39% DXR 7 0.39% PMT 6 0.34% CYP90D1 6 0.34% SQE 6 0.34% HYD1 6 0.34% HMGS 6 0.34% DXS 6 0.34% CYP80B1 5 0.28% GES 5 0.28% TYDC_DDC 5 0.28% PAL 5 0.28% COMT 5 0.28% DWF1 5 0.28% CPI1 5 0.28% IDI 5 0.28% MVD 5 0.28% UGT 5 0.28% PMK 5 0.28% TDC 4 0.22% T16H 4 0.22% MPO 4 0.22% 8HGO 4 0.22% RAS 4 0.22% CYP51G1 4 0.22% FK 4 0.22% HDR/IspH 4 0.22% MCT/IspD 4 0.22% GGPPS 4 0.22% MDS/IspF 4 0.22% GPPS 4 0.22% ADC 3 0.17% DWF5 3 0.17% DWF7 3 0.17% IO 2 0.11% 16OMT 2 0.11% BBE 2 0.11% 6OMT_4OMT_SOMT 2 0.11% CODM/T6ODM 2 0.11% UFGT 2 0.11% DFR 2 0.11% F5H/CYP84A 2 0.11% HCT 2 0.11% BR6OX1/CYP85A1 2 0.11% CMK/IspE 2 0.11% TPS 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 186 7 POD (100) View species results
Terpenoid pathway 155 20 BAHD (69) View species results
Alkaloid pathway 146 12 NMT (37) View species results
Steroid pathway 85 12 CAS (19) View species results
Rosmarinic acid pathway 40 5 4CL (19) View species results
Flavonoid pathway 30 4 4CL (19) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 22 571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, SLS, T16H, T3O
BAHD/acyltransferase 3 125 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status Best Target
PmarPM0239790395410.1 Rosmarinic Acid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
PmarPM0251670402700.1 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
PmarPM0292620422790.1 Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
PmarPM0349020442080.1 Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
PmarPM0371360447430.1 Rosmarinic Acid 4CL medium pass 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ