Penium margaritaceum (penium_margaritaceum)
Imported from atlas release summary for Penium margaritaceum.
642
Candidate Genes
96
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
642
Candidate Genes
CSE
6.91%
BAHD
6.69%
POD
6.63%
4CL
5.9%
C4H
4.89%
C3'H/CYP98A
4.67%
NMT
3.99%
STR
3.2%
Other Families
57.11%
More Families (88)
IFR
49
2.75%
DWF4/CYP90B1
48
2.7%
IFS
45
2.53%
CYP76
43
2.42%
SLS
37
2.08%
CYP71
37
2.08%
BR6OX2/CYP85A2
35
1.97%
T3O
27
1.52%
F3'H/CYP75B
27
1.52%
TRI/TRII
25
1.41%
CYP719
24
1.35%
GS
24
1.35%
CAS
24
1.35%
PYKS
23
1.29%
SMT1/SMT2/SMT3
23
1.29%
COR
22
1.24%
CNMT
20
1.12%
CPD/CYP90A1
18
1.01%
ANR
17
0.96%
LAC
17
0.96%
SGD
16
0.9%
FNS
16
0.9%
SQS/FDFT1
16
0.9%
G8O/G8H
15
0.84%
ODC
14
0.79%
CPR
13
0.73%
FPPS
13
0.73%
AACT
13
0.73%
F3'5'H/CYP75A
12
0.67%
CHS
11
0.62%
CAD
11
0.62%
MVK
11
0.62%
NCS
10
0.56%
TAT
10
0.56%
HPPR
9
0.51%
7DLH
8
0.45%
F3H
8
0.45%
CCR
8
0.45%
SMO1/SMO2
8
0.45%
DET2
8
0.45%
HDS/IspG
8
0.45%
HMGR
8
0.45%
H6H
7
0.39%
DXR
7
0.39%
PMT
6
0.34%
CYP90D1
6
0.34%
SQE
6
0.34%
HYD1
6
0.34%
HMGS
6
0.34%
DXS
6
0.34%
CYP80B1
5
0.28%
GES
5
0.28%
TYDC_DDC
5
0.28%
PAL
5
0.28%
COMT
5
0.28%
DWF1
5
0.28%
CPI1
5
0.28%
IDI
5
0.28%
MVD
5
0.28%
UGT
5
0.28%
PMK
5
0.28%
TDC
4
0.22%
T16H
4
0.22%
MPO
4
0.22%
8HGO
4
0.22%
RAS
4
0.22%
CYP51G1
4
0.22%
FK
4
0.22%
HDR/IspH
4
0.22%
MCT/IspD
4
0.22%
GGPPS
4
0.22%
MDS/IspF
4
0.22%
GPPS
4
0.22%
ADC
3
0.17%
DWF5
3
0.17%
DWF7
3
0.17%
IO
2
0.11%
16OMT
2
0.11%
BBE
2
0.11%
6OMT_4OMT_SOMT
2
0.11%
CODM/T6ODM
2
0.11%
UFGT
2
0.11%
DFR
2
0.11%
F5H/CYP84A
2
0.11%
HCT
2
0.11%
BR6OX1/CYP85A1
2
0.11%
CMK/IspE
2
0.11%
TPS
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 186 | 7 | POD (100) | View species results |
| Terpenoid pathway | 155 | 20 | BAHD (69) | View species results |
| Alkaloid pathway | 146 | 12 | NMT (37) | View species results |
| Steroid pathway | 85 | 12 | CAS (19) | View species results |
| Rosmarinic acid pathway | 40 | 5 | 4CL (19) | View species results |
| Flavonoid pathway | 30 | 4 | 4CL (19) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 22 | 571 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 125 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| PmarPM0008200032340.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| PmarPM0016850065760.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| PmarPM0019310073420.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| PmarPM0035170121060.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| PmarPM0042310139420.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| PmarPM0043920143510.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| PmarPM0046160149460.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| PmarPM0054720169870.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| PmarPM0092950242240.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| PmarPM0101470255490.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| PmarPM0104390260140.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| PmarPM0105660261770.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| PmarPM0117180278780.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| PmarPM0127370292470.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| PmarPM0149100318790.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| PmarPM0169770340800.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| PmarPM0172000342800.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| PmarPM0190650359470.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| PmarPM0239630395310.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| PmarPM0306150428500.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| PmarPM0323980434600.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| PmarPM0327320435920.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| PmarPM0346710441430.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| PmarPM1542010503560.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| PmarPM1829350508160.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |