PlantSME Plant secondary metabolism enzyme database

Penium margaritaceum (penium_margaritaceum)

Imported from atlas release summary for Penium margaritaceum.

642
Candidate Genes
96
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Current group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 28.97% Terpenoid pathway 24.14% Alkaloid pathway 22.74% Steroid pathway 13.24% Rosmarinic acid pathway 6.23% Flavonoid pathway 4.67%
Family Distribution
CSE 6.91% BAHD 6.69% POD 6.63% 4CL 5.9% C4H 4.89% C3'H/CYP98A 4.67% NMT 3.99% STR 3.2%
Other Families 57.11%
More Families (88)
IFR 49 2.75% DWF4/CYP90B1 48 2.7% IFS 45 2.53% CYP76 43 2.42% SLS 37 2.08% CYP71 37 2.08% BR6OX2/CYP85A2 35 1.97% T3O 27 1.52% F3'H/CYP75B 27 1.52% TRI/TRII 25 1.41% CYP719 24 1.35% GS 24 1.35% CAS 24 1.35% PYKS 23 1.29% SMT1/SMT2/SMT3 23 1.29% COR 22 1.24% CNMT 20 1.12% CPD/CYP90A1 18 1.01% ANR 17 0.96% LAC 17 0.96% SGD 16 0.9% FNS 16 0.9% SQS/FDFT1 16 0.9% G8O/G8H 15 0.84% ODC 14 0.79% CPR 13 0.73% FPPS 13 0.73% AACT 13 0.73% F3'5'H/CYP75A 12 0.67% CHS 11 0.62% CAD 11 0.62% MVK 11 0.62% NCS 10 0.56% TAT 10 0.56% HPPR 9 0.51% 7DLH 8 0.45% F3H 8 0.45% CCR 8 0.45% SMO1/SMO2 8 0.45% DET2 8 0.45% HDS/IspG 8 0.45% HMGR 8 0.45% H6H 7 0.39% DXR 7 0.39% PMT 6 0.34% CYP90D1 6 0.34% SQE 6 0.34% HYD1 6 0.34% HMGS 6 0.34% DXS 6 0.34% CYP80B1 5 0.28% GES 5 0.28% TYDC_DDC 5 0.28% PAL 5 0.28% COMT 5 0.28% DWF1 5 0.28% CPI1 5 0.28% IDI 5 0.28% MVD 5 0.28% UGT 5 0.28% PMK 5 0.28% TDC 4 0.22% T16H 4 0.22% MPO 4 0.22% 8HGO 4 0.22% RAS 4 0.22% CYP51G1 4 0.22% FK 4 0.22% HDR/IspH 4 0.22% MCT/IspD 4 0.22% GGPPS 4 0.22% MDS/IspF 4 0.22% GPPS 4 0.22% ADC 3 0.17% DWF5 3 0.17% DWF7 3 0.17% IO 2 0.11% 16OMT 2 0.11% BBE 2 0.11% 6OMT_4OMT_SOMT 2 0.11% CODM/T6ODM 2 0.11% UFGT 2 0.11% DFR 2 0.11% F5H/CYP84A 2 0.11% HCT 2 0.11% BR6OX1/CYP85A1 2 0.11% CMK/IspE 2 0.11% TPS 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 186 7 POD (100) View species results
Terpenoid pathway 155 20 BAHD (69) View species results
Alkaloid pathway 146 12 NMT (37) View species results
Steroid pathway 85 12 CAS (19) View species results
Rosmarinic acid pathway 40 5 4CL (19) View species results
Flavonoid pathway 30 4 4CL (19) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 22 571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, SLS, T16H, T3O
BAHD/acyltransferase 3 125 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
Reset
Gene Pathway Family Confidence Status Best Target
PmarPM0111280270560.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
PmarPM0133810300370.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
PmarPM0395420451970.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
PmarPM0459640460950.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
PmarPM0476230462010.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO