Penium margaritaceum (penium_margaritaceum)
Imported from atlas release summary for Penium margaritaceum.
642
Candidate Genes
96
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
642
Candidate Genes
CSE
6.91%
BAHD
6.69%
POD
6.63%
4CL
5.9%
C4H
4.89%
C3'H/CYP98A
4.67%
NMT
3.99%
STR
3.2%
Other Families
57.11%
More Families (88)
IFR
49
2.75%
DWF4/CYP90B1
48
2.7%
IFS
45
2.53%
CYP76
43
2.42%
SLS
37
2.08%
CYP71
37
2.08%
BR6OX2/CYP85A2
35
1.97%
T3O
27
1.52%
F3'H/CYP75B
27
1.52%
TRI/TRII
25
1.41%
CYP719
24
1.35%
GS
24
1.35%
CAS
24
1.35%
PYKS
23
1.29%
SMT1/SMT2/SMT3
23
1.29%
COR
22
1.24%
CNMT
20
1.12%
CPD/CYP90A1
18
1.01%
ANR
17
0.96%
LAC
17
0.96%
SGD
16
0.9%
FNS
16
0.9%
SQS/FDFT1
16
0.9%
G8O/G8H
15
0.84%
ODC
14
0.79%
CPR
13
0.73%
FPPS
13
0.73%
AACT
13
0.73%
F3'5'H/CYP75A
12
0.67%
CHS
11
0.62%
CAD
11
0.62%
MVK
11
0.62%
NCS
10
0.56%
TAT
10
0.56%
HPPR
9
0.51%
7DLH
8
0.45%
F3H
8
0.45%
CCR
8
0.45%
SMO1/SMO2
8
0.45%
DET2
8
0.45%
HDS/IspG
8
0.45%
HMGR
8
0.45%
H6H
7
0.39%
DXR
7
0.39%
PMT
6
0.34%
CYP90D1
6
0.34%
SQE
6
0.34%
HYD1
6
0.34%
HMGS
6
0.34%
DXS
6
0.34%
CYP80B1
5
0.28%
GES
5
0.28%
TYDC_DDC
5
0.28%
PAL
5
0.28%
COMT
5
0.28%
DWF1
5
0.28%
CPI1
5
0.28%
IDI
5
0.28%
MVD
5
0.28%
UGT
5
0.28%
PMK
5
0.28%
TDC
4
0.22%
T16H
4
0.22%
MPO
4
0.22%
8HGO
4
0.22%
RAS
4
0.22%
CYP51G1
4
0.22%
FK
4
0.22%
HDR/IspH
4
0.22%
MCT/IspD
4
0.22%
GGPPS
4
0.22%
MDS/IspF
4
0.22%
GPPS
4
0.22%
ADC
3
0.17%
DWF5
3
0.17%
DWF7
3
0.17%
IO
2
0.11%
16OMT
2
0.11%
BBE
2
0.11%
6OMT_4OMT_SOMT
2
0.11%
CODM/T6ODM
2
0.11%
UFGT
2
0.11%
DFR
2
0.11%
F5H/CYP84A
2
0.11%
HCT
2
0.11%
BR6OX1/CYP85A1
2
0.11%
CMK/IspE
2
0.11%
TPS
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 186 | 7 | POD (100) | View species results |
| Terpenoid pathway | 155 | 20 | BAHD (69) | View species results |
| Alkaloid pathway | 146 | 12 | NMT (37) | View species results |
| Steroid pathway | 85 | 12 | CAS (19) | View species results |
| Rosmarinic acid pathway | 40 | 5 | 4CL (19) | View species results |
| Flavonoid pathway | 30 | 4 | 4CL (19) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 22 | 571 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 125 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| PmarPM0187090356370.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| PmarPM0192600361390.1 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| PmarPM0210090375730.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| PmarPM0222370384170.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| PmarPM0226720387440.1 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| PmarPM0227880388240.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| PmarPM0243750398000.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| PmarPM0265890410520.1 | Alkaloid | NMT | low | borderline | NMT__00021__sp_O64827_SUVR5_ARATH |
| PmarPM0269520412280.1 | Alkaloid | NMT | low | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| PmarPM0273950414720.1 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| PmarPM0286870420360.1 | Alkaloid | NMT | low | borderline | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| PmarPM0332310437360.1 | Alkaloid | NMT | low | borderline | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| PmarPM0335520438250.1 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| PmarPM0389800450950.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| PmarPM0406130453990.1 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| PmarPM0420120456240.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| PmarPM0652090474940.1 | Alkaloid | NMT | medium | pass | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| PmarPM1017280491150.1 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| PmarPM1380620500190.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| PmarPM1627610505050.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| PmarPM2989720520590.1 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |