PlantSME Plant secondary metabolism enzyme database

Phtheirospermum japonicum (phtheirospermum_japonicum)

Imported from atlas release summary for Phtheirospermum japonicum.

1515
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.11% Alkaloid pathway 21.65% Phenylpropanoid pathway 20.79% Flavonoid pathway 13.73% Rosmarinic acid pathway 8.45% Steroid pathway 6.27%
Family Distribution
C4H 6.66% BAHD 6.39% C3'H/CYP98A 5.46% UGT 4.29% UFGT 3.91% 4CL 3.83% POD 3.81% 7DLGT 3.78%
Other Families 61.86%
More Families (97)
IFS 128 3.41% CYP76 122 3.25% T3O 114 3.04% F3H 102 2.72% CAD 91 2.42% DWF4/CYP90B1 82 2.18% CODM/T6ODM 67 1.78% F3'H/CYP75B 66 1.76% CYP71 66 1.76% STR 65 1.73% NMT 63 1.68% SMT1/SMT2/SMT3 55 1.46% GS 48 1.28% BR6OX2/CYP85A2 47 1.25% TRI/TRII 45 1.2% H6H 44 1.17% PAL 42 1.12% CAS 41 1.09% T16H 40 1.07% FNS 39 1.04% TPS 38 1.01% GES 37 0.99% HCT 37 0.99% LAC 36 0.96% IFR 35 0.93% ANR 32 0.85% G8O/G8H 31 0.83% SGD 30 0.8% 7DLH 29 0.77% PYKS 27 0.72% BBE 25 0.67% F5H/CYP84A 25 0.67% LAMT 24 0.64% TAT 24 0.64% RAS 24 0.64% SLS 23 0.61% CYP90D1 23 0.61% CSE 22 0.59% PMT 21 0.56% COMT 20 0.53% CPD/CYP90A1 20 0.53% F3'5'H/CYP75A 19 0.51% CCR 18 0.48% ROT3/CYP90C1 17 0.45% 16OMT 16 0.43% NCS 16 0.43% IO 15 0.4% 8HGO 14 0.37% CYP80B1 13 0.35% DFR 13 0.35% CNMT 12 0.32% ANS/LDOX 12 0.32% CPR 12 0.32% COR 11 0.29% GGPPS 11 0.29% DXS 11 0.29% CCoAOMT 10 0.27% FPPS 10 0.27% MPO 9 0.24% AACT 9 0.24% HPPR 8 0.21% SQE 8 0.21% BR6OX1/CYP85A1 8 0.21% CYP51G1 8 0.21% TYDC_DDC 7 0.19% ISY 6 0.16% FK 6 0.16% SQS/FDFT1 6 0.16% CYP719 5 0.13% CHI 5 0.13% MVD 5 0.13% CHS 4 0.11% DET2 4 0.11% SMO1/SMO2 4 0.11% HMGR 4 0.11% MVK 4 0.11% DWF1 3 0.08% MCT/IspD 3 0.08% IDI 3 0.08% DXR 3 0.08% CYP80F1 2 0.05% CMK/IspE 2 0.05% MDS/IspF 2 0.05% HMGS 2 0.05% ADC 1 0.03% XMT_MXMT_DXMT 1 0.03% TDC 1 0.03% 6OMT_4OMT_SOMT 1 0.03% FLS 1 0.03% HYD1 1 0.03% CPI1 1 0.03% DWF5 1 0.03% DWF7 1 0.03% GPPS 1 0.03% PMK 1 0.03% HDS/IspG 1 0.03% HDR/IspH 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 441 20 BAHD (159) View species results
Alkaloid pathway 328 22 7DLGT (64) View species results
Phenylpropanoid pathway 315 11 POD (132) View species results
Flavonoid pathway 208 13 UFGT (134) View species results
Rosmarinic acid pathway 128 7 C4H (39) View species results
Steroid pathway 95 14 CAS (34) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1358 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status
PjapPjv1Scaffold_1300041170.1 Alkaloid NCS medium borderline
PjapPjv1Scaffold_1590065210.1 Alkaloid NCS low borderline
PjapPjv1Scaffold_2000089750.1 Alkaloid NCS medium borderline
PjapPjv1Scaffold_2000089760.1 Alkaloid NCS medium borderline
PjapPjv1Scaffold_2140096220.1 Alkaloid NCS medium borderline
PjapPjv1Scaffold_3590156660.1 Alkaloid NCS medium borderline
PjapPjv1Scaffold_4800191710.1 Alkaloid NCS medium borderline
PjapPjv1Scaffold_520203860.1 Alkaloid NCS low borderline
PjapPjv1Scaffold_5700219280.1 Alkaloid NCS medium borderline
PjapPjv1Scaffold_620232180.1 Alkaloid NCS medium pass
PjapPjv1Scaffold_620232220.1 Alkaloid NCS low borderline
PjapPjv1Scaffold_62660234090.1 Alkaloid NCS low borderline
PjapPjv1Scaffold_7300257920.1 Alkaloid NCS medium pass
PjapPjv1Scaffold_7300257930.1 Alkaloid NCS medium pass
PjapPjv1Scaffold_810273350.1 Alkaloid NCS medium borderline
PjapPjv1Scaffold_920290660.1 Alkaloid NCS medium borderline