PlantSME Plant secondary metabolism enzyme database

Phtheirospermum japonicum (phtheirospermum_japonicum)

Imported from atlas release summary for Phtheirospermum japonicum.

1515
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.11% Alkaloid pathway 21.65% Phenylpropanoid pathway 20.79% Flavonoid pathway 13.73% Rosmarinic acid pathway 8.45% Steroid pathway 6.27%
Family Distribution
C4H 6.66% BAHD 6.39% C3'H/CYP98A 5.46% UGT 4.29% UFGT 3.91% 4CL 3.83% POD 3.81% 7DLGT 3.78%
Other Families 61.86%
More Families (97)
IFS 128 3.41% CYP76 122 3.25% T3O 114 3.04% F3H 102 2.72% CAD 91 2.42% DWF4/CYP90B1 82 2.18% CODM/T6ODM 67 1.78% F3'H/CYP75B 66 1.76% CYP71 66 1.76% STR 65 1.73% NMT 63 1.68% SMT1/SMT2/SMT3 55 1.46% GS 48 1.28% BR6OX2/CYP85A2 47 1.25% TRI/TRII 45 1.2% H6H 44 1.17% PAL 42 1.12% CAS 41 1.09% T16H 40 1.07% FNS 39 1.04% TPS 38 1.01% GES 37 0.99% HCT 37 0.99% LAC 36 0.96% IFR 35 0.93% ANR 32 0.85% G8O/G8H 31 0.83% SGD 30 0.8% 7DLH 29 0.77% PYKS 27 0.72% BBE 25 0.67% F5H/CYP84A 25 0.67% LAMT 24 0.64% TAT 24 0.64% RAS 24 0.64% SLS 23 0.61% CYP90D1 23 0.61% CSE 22 0.59% PMT 21 0.56% COMT 20 0.53% CPD/CYP90A1 20 0.53% F3'5'H/CYP75A 19 0.51% CCR 18 0.48% ROT3/CYP90C1 17 0.45% 16OMT 16 0.43% NCS 16 0.43% IO 15 0.4% 8HGO 14 0.37% CYP80B1 13 0.35% DFR 13 0.35% CNMT 12 0.32% ANS/LDOX 12 0.32% CPR 12 0.32% COR 11 0.29% GGPPS 11 0.29% DXS 11 0.29% CCoAOMT 10 0.27% FPPS 10 0.27% MPO 9 0.24% AACT 9 0.24% HPPR 8 0.21% SQE 8 0.21% BR6OX1/CYP85A1 8 0.21% CYP51G1 8 0.21% TYDC_DDC 7 0.19% ISY 6 0.16% FK 6 0.16% SQS/FDFT1 6 0.16% CYP719 5 0.13% CHI 5 0.13% MVD 5 0.13% CHS 4 0.11% DET2 4 0.11% SMO1/SMO2 4 0.11% HMGR 4 0.11% MVK 4 0.11% DWF1 3 0.08% MCT/IspD 3 0.08% IDI 3 0.08% DXR 3 0.08% CYP80F1 2 0.05% CMK/IspE 2 0.05% MDS/IspF 2 0.05% HMGS 2 0.05% ADC 1 0.03% XMT_MXMT_DXMT 1 0.03% TDC 1 0.03% 6OMT_4OMT_SOMT 1 0.03% FLS 1 0.03% HYD1 1 0.03% CPI1 1 0.03% DWF5 1 0.03% DWF7 1 0.03% GPPS 1 0.03% PMK 1 0.03% HDS/IspG 1 0.03% HDR/IspH 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 441 20 BAHD (159) View species results
Alkaloid pathway 328 22 7DLGT (64) View species results
Phenylpropanoid pathway 315 11 POD (132) View species results
Flavonoid pathway 208 13 UFGT (134) View species results
Rosmarinic acid pathway 128 7 C4H (39) View species results
Steroid pathway 95 14 CAS (34) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1358 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
PjapPjv1Scaffold_6940249940.1 Alkaloid NMT medium borderline NMT__00066__sp_Q9SU94_ANM11_ARATH
PjapPjv1Scaffold_7540263280.1 Alkaloid NMT medium pass NMT__00068__sp_Q9XI84_RBCMT_ARATH
PjapPjv1Scaffold_7570263680.1 Alkaloid NMT medium pass NMT__00067__sp_Q9T0G7_SUVH9_ARATH
PjapPjv1Scaffold_7600264550.1 Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
PjapPjv1Scaffold_76450264950.1 Alkaloid NMT medium borderline NMT__00059__sp_Q9M571_PEAMT_SPIOL
PjapPjv1Scaffold_8220275810.1 Alkaloid NMT low borderline NMT__00019__sp_O22781_SUVH2_ARATH
PjapPjv1Scaffold_8560280270.1 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
PjapPjv1Scaffold_860280710.1 Alkaloid NMT medium borderline NMT__00060__sp_Q9MAT5_ANM10_ARATH
PjapPjv1Scaffold_90285840.1 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
PjapPjv1Scaffold_920290730.1 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
PjapPjv1Scaffold_92450291580.1 Alkaloid NMT medium pass NMT__00040__sp_Q84WW6_ASHH1_ARATH
PjapPjv1Scaffold_9380293150.1 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
PjapPjv1Scaffold_9800301080.1 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH