Phtheirospermum japonicum (phtheirospermum_japonicum)
Imported from atlas release summary for Phtheirospermum japonicum.
1832
Candidate Protein Records
1515
Pathway-Level Records
3755
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3755
Family-Level Calls
C4H
6.66%
BAHD
6.39%
C3'H/CYP98A
5.46%
UGT
4.29%
UFGT
3.91%
4CL
3.83%
POD
3.81%
7DLGT
3.78%
Other Families
61.86%
More Families (97)
IFS
128
3.41%
CYP76
122
3.25%
T3O
114
3.04%
F3H
102
2.72%
CAD
91
2.42%
DWF4/CYP90B1
82
2.18%
CODM/T6ODM
67
1.78%
F3'H/CYP75B
66
1.76%
CYP71
66
1.76%
STR
65
1.73%
NMT
63
1.68%
SMT1/SMT2/SMT3
55
1.46%
GS
48
1.28%
BR6OX2/CYP85A2
47
1.25%
TRI/TRII
45
1.2%
H6H
44
1.17%
PAL
42
1.12%
CAS
41
1.09%
T16H
40
1.07%
FNS
39
1.04%
TPS
38
1.01%
GES
37
0.99%
HCT
37
0.99%
LAC
36
0.96%
IFR
35
0.93%
ANR
32
0.85%
G8O/G8H
31
0.83%
SGD
30
0.8%
7DLH
29
0.77%
PYKS
27
0.72%
BBE
25
0.67%
F5H/CYP84A
25
0.67%
LAMT
24
0.64%
TAT
24
0.64%
RAS
24
0.64%
SLS
23
0.61%
CYP90D1
23
0.61%
CSE
22
0.59%
PMT
21
0.56%
COMT
20
0.53%
CPD/CYP90A1
20
0.53%
F3'5'H/CYP75A
19
0.51%
CCR
18
0.48%
ROT3/CYP90C1
17
0.45%
16OMT
16
0.43%
NCS
16
0.43%
IO
15
0.4%
8HGO
14
0.37%
CYP80B1
13
0.35%
DFR
13
0.35%
CNMT
12
0.32%
ANS/LDOX
12
0.32%
CPR
12
0.32%
COR
11
0.29%
GGPPS
11
0.29%
DXS
11
0.29%
CCoAOMT
10
0.27%
FPPS
10
0.27%
MPO
9
0.24%
AACT
9
0.24%
HPPR
8
0.21%
SQE
8
0.21%
BR6OX1/CYP85A1
8
0.21%
CYP51G1
8
0.21%
TYDC_DDC
7
0.19%
ISY
6
0.16%
FK
6
0.16%
SQS/FDFT1
6
0.16%
CYP719
5
0.13%
CHI
5
0.13%
MVD
5
0.13%
CHS
4
0.11%
DET2
4
0.11%
SMO1/SMO2
4
0.11%
HMGR
4
0.11%
MVK
4
0.11%
DWF1
3
0.08%
MCT/IspD
3
0.08%
IDI
3
0.08%
DXR
3
0.08%
CYP80F1
2
0.05%
CMK/IspE
2
0.05%
MDS/IspF
2
0.05%
HMGS
2
0.05%
ADC
1
0.03%
XMT_MXMT_DXMT
1
0.03%
TDC
1
0.03%
6OMT_4OMT_SOMT
1
0.03%
FLS
1
0.03%
HYD1
1
0.03%
CPI1
1
0.03%
DWF5
1
0.03%
DWF7
1
0.03%
GPPS
1
0.03%
PMK
1
0.03%
HDS/IspG
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 441 | 20 | BAHD (159) | View species results |
| Alkaloid pathway | 328 | 22 | 7DLGT (64) | View species results |
| Phenylpropanoid pathway | 315 | 11 | POD (132) | View species results |
| Flavonoid pathway | 208 | 13 | UFGT (134) | View species results |
| Rosmarinic acid pathway | 128 | 7 | C4H (39) | View species results |
| Steroid pathway | 95 | 14 | CAS (34) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1358 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 301 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| PjapPjv1Scaffold_1430053760.1 | Alkaloid | IO | medium | borderline |
| PjapPjv1Scaffold_1630067280.1 | Alkaloid | IO | medium | borderline |
| PjapPjv1Scaffold_1670071300.1 | Alkaloid | IO | medium | borderline |
| PjapPjv1Scaffold_2080093740.1 | Alkaloid | IO | medium | borderline |
| PjapPjv1Scaffold_3480152260.1 | Alkaloid | IO | medium | borderline |
| PjapPjv1Scaffold_3480152270.1 | Alkaloid | IO | medium | borderline |
| PjapPjv1Scaffold_3640158830.1 | Alkaloid | IO | medium | borderline |
| PjapPjv1Scaffold_3950168470.1 | Alkaloid | IO | low | borderline |
| PjapPjv1Scaffold_580221520.1 | Alkaloid | IO | low | borderline |
| PjapPjv1Scaffold_6740246080.1 | Alkaloid | IO | low | borderline |
| PjapPjv1Scaffold_8450278270.1 | Alkaloid | IO | medium | borderline |
| PjapPjv1Scaffold_90286360.1 | Alkaloid | IO | low | borderline |
| PjapPjv1Scaffold_950296080.1 | Alkaloid | IO | low | borderline |
| PjapPjv1Scaffold_1690072240.1 | Alkaloid | ISY | medium | pass |
| PjapPjv1Scaffold_1690072250.1 | Alkaloid | ISY | medium | pass |
| PjapPjv1Scaffold_190084410.1 | Alkaloid | ISY | medium | pass |
| PjapPjv1Scaffold_2870129200.1 | Alkaloid | ISY | medium | pass |
| PjapPjv1Scaffold_2870129210.1 | Alkaloid | ISY | high | pass |
| PjapPjv1Scaffold_960297550.1 | Alkaloid | ISY | low | borderline |
| PjapPjv1Scaffold_10820015290.1 | Alkaloid | LAMT | medium | borderline |
| PjapPjv1Scaffold_1210030100.1 | Alkaloid | LAMT | medium | borderline |
| PjapPjv1Scaffold_1210030400.1 | Alkaloid | LAMT | medium | borderline |
| PjapPjv1Scaffold_12300033070.1 | Alkaloid | LAMT | medium | borderline |
| PjapPjv1Scaffold_12300033080.1 | Alkaloid | LAMT | medium | borderline |
| PjapPjv1Scaffold_12300033090.1 | Alkaloid | LAMT | medium | borderline |
| PjapPjv1Scaffold_12300033100.1 | Alkaloid | LAMT | medium | borderline |
| PjapPjv1Scaffold_1340045100.1 | Alkaloid | LAMT | medium | pass |
| PjapPjv1Scaffold_1440054760.1 | Alkaloid | LAMT | medium | pass |
| PjapPjv1Scaffold_1680071560.1 | Alkaloid | LAMT | medium | borderline |
| PjapPjv1Scaffold_1680071580.1 | Alkaloid | LAMT | medium | borderline |
| PjapPjv1Scaffold_1680071600.1 | Alkaloid | LAMT | medium | borderline |
| PjapPjv1Scaffold_1680071620.1 | Alkaloid | LAMT | medium | borderline |
| PjapPjv1Scaffold_1680071640.1 | Alkaloid | LAMT | medium | borderline |
| PjapPjv1Scaffold_1680071660.1 | Alkaloid | LAMT | medium | borderline |
| PjapPjv1Scaffold_2810127180.1 | Alkaloid | LAMT | medium | borderline |
| PjapPjv1Scaffold_2850128450.1 | Alkaloid | LAMT | medium | borderline |
| PjapPjv1Scaffold_4100174950.1 | Alkaloid | LAMT | medium | borderline |
| PjapPjv1Scaffold_5240205570.1 | Alkaloid | LAMT | medium | borderline |
| PjapPjv1Scaffold_540209670.1 | Alkaloid | LAMT | medium | borderline |
| PjapPjv1Scaffold_5540215080.1 | Alkaloid | LAMT | medium | borderline |
| PjapPjv1Scaffold_6430239060.1 | Alkaloid | LAMT | medium | pass |
| PjapPjv1Scaffold_7130254160.1 | Alkaloid | LAMT | medium | pass |
| PjapPjv1Scaffold_900288160.1 | Alkaloid | LAMT | medium | borderline |
| PjapPjv1Scaffold_1170026180.1 | Alkaloid | MPO | medium | pass |
| PjapPjv1Scaffold_130039570.1 | Alkaloid | MPO | medium | pass |
| PjapPjv1Scaffold_2230101770.1 | Alkaloid | MPO | high | pass |
| PjapPjv1Scaffold_330146440.1 | Alkaloid | MPO | medium | pass |
| PjapPjv1Scaffold_4400181910.1 | Alkaloid | MPO | medium | pass |
| PjapPjv1Scaffold_6760246360.1 | Alkaloid | MPO | low | borderline |
| PjapPjv1Scaffold_750261830.1 | Alkaloid | MPO | medium | pass |