Phtheirospermum japonicum (phtheirospermum_japonicum)
Imported from atlas release summary for Phtheirospermum japonicum.
1515
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1515
Candidate Genes
C4H
6.66%
BAHD
6.39%
C3'H/CYP98A
5.46%
UGT
4.29%
UFGT
3.91%
4CL
3.83%
POD
3.81%
7DLGT
3.78%
Other Families
61.86%
More Families (97)
IFS
128
3.41%
CYP76
122
3.25%
T3O
114
3.04%
F3H
102
2.72%
CAD
91
2.42%
DWF4/CYP90B1
82
2.18%
CODM/T6ODM
67
1.78%
F3'H/CYP75B
66
1.76%
CYP71
66
1.76%
STR
65
1.73%
NMT
63
1.68%
SMT1/SMT2/SMT3
55
1.46%
GS
48
1.28%
BR6OX2/CYP85A2
47
1.25%
TRI/TRII
45
1.2%
H6H
44
1.17%
PAL
42
1.12%
CAS
41
1.09%
T16H
40
1.07%
FNS
39
1.04%
TPS
38
1.01%
GES
37
0.99%
HCT
37
0.99%
LAC
36
0.96%
IFR
35
0.93%
ANR
32
0.85%
G8O/G8H
31
0.83%
SGD
30
0.8%
7DLH
29
0.77%
PYKS
27
0.72%
BBE
25
0.67%
F5H/CYP84A
25
0.67%
LAMT
24
0.64%
TAT
24
0.64%
RAS
24
0.64%
SLS
23
0.61%
CYP90D1
23
0.61%
CSE
22
0.59%
PMT
21
0.56%
COMT
20
0.53%
CPD/CYP90A1
20
0.53%
F3'5'H/CYP75A
19
0.51%
CCR
18
0.48%
ROT3/CYP90C1
17
0.45%
16OMT
16
0.43%
NCS
16
0.43%
IO
15
0.4%
8HGO
14
0.37%
CYP80B1
13
0.35%
DFR
13
0.35%
CNMT
12
0.32%
ANS/LDOX
12
0.32%
CPR
12
0.32%
COR
11
0.29%
GGPPS
11
0.29%
DXS
11
0.29%
CCoAOMT
10
0.27%
FPPS
10
0.27%
MPO
9
0.24%
AACT
9
0.24%
HPPR
8
0.21%
SQE
8
0.21%
BR6OX1/CYP85A1
8
0.21%
CYP51G1
8
0.21%
TYDC_DDC
7
0.19%
ISY
6
0.16%
FK
6
0.16%
SQS/FDFT1
6
0.16%
CYP719
5
0.13%
CHI
5
0.13%
MVD
5
0.13%
CHS
4
0.11%
DET2
4
0.11%
SMO1/SMO2
4
0.11%
HMGR
4
0.11%
MVK
4
0.11%
DWF1
3
0.08%
MCT/IspD
3
0.08%
IDI
3
0.08%
DXR
3
0.08%
CYP80F1
2
0.05%
CMK/IspE
2
0.05%
MDS/IspF
2
0.05%
HMGS
2
0.05%
ADC
1
0.03%
XMT_MXMT_DXMT
1
0.03%
TDC
1
0.03%
6OMT_4OMT_SOMT
1
0.03%
FLS
1
0.03%
HYD1
1
0.03%
CPI1
1
0.03%
DWF5
1
0.03%
DWF7
1
0.03%
GPPS
1
0.03%
PMK
1
0.03%
HDS/IspG
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 441 | 20 | BAHD (159) | View species results |
| Alkaloid pathway | 328 | 22 | 7DLGT (64) | View species results |
| Phenylpropanoid pathway | 315 | 11 | POD (132) | View species results |
| Flavonoid pathway | 208 | 13 | UFGT (134) | View species results |
| Rosmarinic acid pathway | 128 | 7 | C4H (39) | View species results |
| Steroid pathway | 95 | 14 | CAS (34) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1358 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 301 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| PjapPjv1Scaffold_1430053660.1 | Alkaloid | 7DLGT | medium | pass |
| PjapPjv1Scaffold_1480056500.1 | Alkaloid | 7DLGT | medium | pass |
| PjapPjv1Scaffold_1500059060.1 | Alkaloid | 7DLGT | high | pass |
| PjapPjv1Scaffold_1500059080.1 | Alkaloid | 7DLGT | medium | pass |
| PjapPjv1Scaffold_1520060750.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_1520060760.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_1520060770.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_15210060820.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_15210060830.1 | Alkaloid | 7DLGT | medium | pass |
| PjapPjv1Scaffold_15230060920.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_1660069170.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_1720076120.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_1730076440.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_1730076450.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_190084190.1 | Alkaloid | 7DLGT | medium | pass |
| PjapPjv1Scaffold_1970087260.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_2000090630.1 | Alkaloid | 7DLGT | medium | pass |
| PjapPjv1Scaffold_210094160.1 | Alkaloid | 7DLGT | medium | pass |
| PjapPjv1Scaffold_210094170.1 | Alkaloid | 7DLGT | medium | pass |
| PjapPjv1Scaffold_2150097260.1 | Alkaloid | 7DLGT | medium | pass |
| PjapPjv1Scaffold_21920099130.1 | Alkaloid | 7DLGT | medium | pass |
| PjapPjv1Scaffold_2280103010.1 | Alkaloid | 7DLGT | medium | pass |
| PjapPjv1Scaffold_2280103030.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_2280103050.1 | Alkaloid | 7DLGT | medium | pass |
| PjapPjv1Scaffold_2280103070.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_2290103790.1 | Alkaloid | 7DLGT | medium | pass |
| PjapPjv1Scaffold_2290103810.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_2290103820.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_2290103840.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_2290103890.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_2370107570.1 | Alkaloid | 7DLGT | medium | pass |
| PjapPjv1Scaffold_2370107590.1 | Alkaloid | 7DLGT | medium | pass |
| PjapPjv1Scaffold_250113700.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_250113710.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_250113730.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_2540115780.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_2550115860.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_2580117360.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_25920117770.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_2710122210.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_2710122230.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_2710122240.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_2710122260.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_27520123760.1 | Alkaloid | 7DLGT | medium | pass |
| PjapPjv1Scaffold_2990133360.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_300135210.1 | Alkaloid | 7DLGT | medium | pass |
| PjapPjv1Scaffold_3230143600.1 | Alkaloid | 7DLGT | medium | pass |
| PjapPjv1Scaffold_3230143630.1 | Alkaloid | 7DLGT | medium | pass |
| PjapPjv1Scaffold_3250143930.1 | Alkaloid | 7DLGT | low | borderline |
| PjapPjv1Scaffold_350152800.1 | Alkaloid | 7DLGT | low | borderline |