Phyllostachys edulis (phyllostachys_edulis)
Imported from atlas release summary for Phyllostachys edulis.
2885
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2885
Candidate Genes
BAHD
5.93%
C4H
5.81%
C3'H/CYP98A
5.78%
POD
5.27%
UGT
4.45%
7DLGT
4.01%
UFGT
3.85%
T3O
3.37%
Other Families
61.53%
More Families (97)
IFS
212
3.2%
4CL
201
3.03%
CYP76
193
2.91%
NMT
164
2.48%
F3'H/CYP75B
151
2.28%
DWF4/CYP90B1
151
2.28%
F3H
139
2.1%
BR6OX2/CYP85A2
124
1.87%
STR
119
1.8%
CYP71
117
1.77%
CAD
109
1.65%
CAS
108
1.63%
SMT1/SMT2/SMT3
107
1.61%
LAC
92
1.39%
PYKS
91
1.37%
TPS
84
1.27%
CSE
79
1.19%
GES
78
1.18%
TRI/TRII
72
1.09%
CODM/T6ODM
71
1.07%
RAS
70
1.06%
H6H
65
0.98%
HCT
64
0.97%
IFR
60
0.91%
T16H
59
0.89%
PMT
58
0.88%
SLS
53
0.8%
SGD
51
0.77%
G8O/G8H
51
0.77%
CCR
51
0.77%
ANR
50
0.75%
COMT
43
0.65%
PAL
42
0.63%
GS
40
0.6%
CYP90D1
40
0.6%
FPPS
39
0.59%
16OMT
34
0.51%
FNS
34
0.51%
CPR
34
0.51%
BR6OX1/CYP85A1
33
0.5%
F3'5'H/CYP75A
31
0.47%
8HGO
29
0.44%
DFR
27
0.41%
NCS
26
0.39%
CHS
26
0.39%
CYP51G1
24
0.36%
7DLH
22
0.33%
IO
22
0.33%
COR
21
0.32%
F5H/CYP84A
21
0.32%
CPD/CYP90A1
21
0.32%
TAT
20
0.3%
BBE
18
0.27%
CNMT
15
0.23%
ANS/LDOX
15
0.23%
GGPPS
15
0.23%
TYDC_DDC
14
0.21%
LAMT
14
0.21%
SQS/FDFT1
14
0.21%
DXS
13
0.2%
MVD
13
0.2%
TDC
12
0.18%
CCoAOMT
12
0.18%
HMGS
12
0.18%
AACT
12
0.18%
HPPR
11
0.17%
SMO1/SMO2
11
0.17%
ROT3/CYP90C1
11
0.17%
ADC
10
0.15%
CYP719
9
0.14%
MCT/IspD
9
0.14%
XMT_MXMT_DXMT
8
0.12%
ISY
8
0.12%
DWF1
8
0.12%
MVK
7
0.11%
HMGR
7
0.11%
CYP80B1
6
0.09%
SQE
6
0.09%
IDI
6
0.09%
PMK
6
0.09%
MDS/IspF
6
0.09%
6OMT_4OMT_SOMT
5
0.08%
MPO
5
0.08%
CHI
5
0.08%
CYP80F1
4
0.06%
ODC
4
0.06%
DET2
4
0.06%
HYD1
3
0.05%
HDS/IspG
3
0.05%
CPI1
2
0.03%
FK
2
0.03%
DWF7
2
0.03%
DXR
2
0.03%
HDR/IspH
2
0.03%
FLS
1
0.02%
DWF5
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 820 | 19 | BAHD (285) | View species results |
| Phenylpropanoid pathway | 648 | 12 | POD (312) | View species results |
| Alkaloid pathway | 618 | 25 | 7DLGT (122) | View species results |
| Flavonoid pathway | 358 | 13 | UFGT (234) | View species results |
| Rosmarinic acid pathway | 256 | 7 | C4H (126) | View species results |
| Steroid pathway | 185 | 11 | CAS (81) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2346 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 527 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Peduhic_scaffold_220312170.1 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Peduhic_scaffold_220312360.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Peduhic_scaffold_220312780.1 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Peduhic_scaffold_230314270.1 | Alkaloid | NMT | medium | pass | NMT__00023__sp_O82210_ANM12_ARATH |
| Peduhic_scaffold_230316820.1 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| Peduhic_scaffold_230321530.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Peduhic_scaffold_230324380.1 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Peduhic_scaffold_230328300.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Peduhic_scaffold_230334120.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Peduhic_scaffold_240340120.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Peduhic_scaffold_240347870.1 | Alkaloid | NMT | low | borderline | NMT__00034__sp_Q5VN06_CLF_ORYSJ |
| Peduhic_scaffold_240351960.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Peduhic_scaffold_240356500.1 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| Peduhic_scaffold_240358570.1 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Peduhic_scaffold_240359260.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Peduhic_scaffold_240360440.1 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Peduhic_scaffold_27560361270.1 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| Peduhic_scaffold_27560361280.1 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| Peduhic_scaffold_30370280.1 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Peduhic_scaffold_30370420.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Peduhic_scaffold_30371610.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Peduhic_scaffold_30372590.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Peduhic_scaffold_30373830.1 | Alkaloid | NMT | medium | pass | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Peduhic_scaffold_30378050.1 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| Peduhic_scaffold_30378090.1 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| Peduhic_scaffold_30378510.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| Peduhic_scaffold_30380380.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Peduhic_scaffold_30383600.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| Peduhic_scaffold_30386830.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Peduhic_scaffold_34070391420.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Peduhic_scaffold_40393890.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Peduhic_scaffold_40395360.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Peduhic_scaffold_40403460.1 | Alkaloid | NMT | medium | pass | NMT__00019__sp_O22781_SUVH2_ARATH |
| Peduhic_scaffold_40405060.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| Peduhic_scaffold_40405620.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| Peduhic_scaffold_42780410340.1 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Peduhic_scaffold_50412950.1 | Alkaloid | NMT | low | borderline | NMT__00020__sp_O23372_ATXR3_ARATH |
| Peduhic_scaffold_50413080.1 | Alkaloid | NMT | medium | pass | NMT__00015__sp_C8YTM5_PEAM2_WHEAT |
| Peduhic_scaffold_50418950.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Peduhic_scaffold_50420680.1 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Peduhic_scaffold_50423490.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| Peduhic_scaffold_50425610.1 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Peduhic_scaffold_60429370.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Peduhic_scaffold_60430840.1 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Peduhic_scaffold_60432550.1 | Alkaloid | NMT | medium | pass | NMT__00034__sp_Q5VN06_CLF_ORYSJ |
| Peduhic_scaffold_60441740.1 | Alkaloid | NMT | low | borderline | NMT__00020__sp_O23372_ATXR3_ARATH |
| Peduhic_scaffold_60448700.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Peduhic_scaffold_70450080.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Peduhic_scaffold_70457950.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Peduhic_scaffold_70461030.1 | Alkaloid | NMT | medium | borderline | NMT__00045__sp_Q8VYX1_PEAM1_WHEAT |