PlantSME Plant secondary metabolism enzyme database

Phyllostachys edulis (phyllostachys_edulis)

Imported from atlas release summary for Phyllostachys edulis.

2885
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.42% Phenylpropanoid pathway 22.46% Alkaloid pathway 21.42% Flavonoid pathway 12.41% Rosmarinic acid pathway 8.87% Steroid pathway 6.41%
Family Distribution
BAHD 5.93% C4H 5.81% C3'H/CYP98A 5.78% POD 5.27% UGT 4.45% 7DLGT 4.01% UFGT 3.85% T3O 3.37%
Other Families 61.53%
More Families (97)
IFS 212 3.2% 4CL 201 3.03% CYP76 193 2.91% NMT 164 2.48% F3'H/CYP75B 151 2.28% DWF4/CYP90B1 151 2.28% F3H 139 2.1% BR6OX2/CYP85A2 124 1.87% STR 119 1.8% CYP71 117 1.77% CAD 109 1.65% CAS 108 1.63% SMT1/SMT2/SMT3 107 1.61% LAC 92 1.39% PYKS 91 1.37% TPS 84 1.27% CSE 79 1.19% GES 78 1.18% TRI/TRII 72 1.09% CODM/T6ODM 71 1.07% RAS 70 1.06% H6H 65 0.98% HCT 64 0.97% IFR 60 0.91% T16H 59 0.89% PMT 58 0.88% SLS 53 0.8% SGD 51 0.77% G8O/G8H 51 0.77% CCR 51 0.77% ANR 50 0.75% COMT 43 0.65% PAL 42 0.63% GS 40 0.6% CYP90D1 40 0.6% FPPS 39 0.59% 16OMT 34 0.51% FNS 34 0.51% CPR 34 0.51% BR6OX1/CYP85A1 33 0.5% F3'5'H/CYP75A 31 0.47% 8HGO 29 0.44% DFR 27 0.41% NCS 26 0.39% CHS 26 0.39% CYP51G1 24 0.36% 7DLH 22 0.33% IO 22 0.33% COR 21 0.32% F5H/CYP84A 21 0.32% CPD/CYP90A1 21 0.32% TAT 20 0.3% BBE 18 0.27% CNMT 15 0.23% ANS/LDOX 15 0.23% GGPPS 15 0.23% TYDC_DDC 14 0.21% LAMT 14 0.21% SQS/FDFT1 14 0.21% DXS 13 0.2% MVD 13 0.2% TDC 12 0.18% CCoAOMT 12 0.18% HMGS 12 0.18% AACT 12 0.18% HPPR 11 0.17% SMO1/SMO2 11 0.17% ROT3/CYP90C1 11 0.17% ADC 10 0.15% CYP719 9 0.14% MCT/IspD 9 0.14% XMT_MXMT_DXMT 8 0.12% ISY 8 0.12% DWF1 8 0.12% MVK 7 0.11% HMGR 7 0.11% CYP80B1 6 0.09% SQE 6 0.09% IDI 6 0.09% PMK 6 0.09% MDS/IspF 6 0.09% 6OMT_4OMT_SOMT 5 0.08% MPO 5 0.08% CHI 5 0.08% CYP80F1 4 0.06% ODC 4 0.06% DET2 4 0.06% HYD1 3 0.05% HDS/IspG 3 0.05% CPI1 2 0.03% FK 2 0.03% DWF7 2 0.03% DXR 2 0.03% HDR/IspH 2 0.03% FLS 1 0.02% DWF5 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 820 19 BAHD (285) View species results
Phenylpropanoid pathway 648 12 POD (312) View species results
Alkaloid pathway 618 25 7DLGT (122) View species results
Flavonoid pathway 358 13 UFGT (234) View species results
Rosmarinic acid pathway 256 7 C4H (126) View species results
Steroid pathway 185 11 CAS (81) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2346 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 527 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status Best Target
Peduhic_scaffold_80473980.1 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Peduhic_scaffold_80474020.1 Alkaloid PMT low borderline PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Peduhic_scaffold_80482480.1 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Peduhic_scaffold_80482510.1 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Peduhic_scaffold_80482530.1 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Peduhic_scaffold_80485370.1 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Peduhic_scaffold_80488620.1 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Peduhic_scaffold_90494300.1 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ