Phyllostachys edulis (phyllostachys_edulis)
Imported from atlas release summary for Phyllostachys edulis.
2885
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2885
Candidate Genes
BAHD
5.93%
C4H
5.81%
C3'H/CYP98A
5.78%
POD
5.27%
UGT
4.45%
7DLGT
4.01%
UFGT
3.85%
T3O
3.37%
Other Families
61.53%
More Families (97)
IFS
212
3.2%
4CL
201
3.03%
CYP76
193
2.91%
NMT
164
2.48%
F3'H/CYP75B
151
2.28%
DWF4/CYP90B1
151
2.28%
F3H
139
2.1%
BR6OX2/CYP85A2
124
1.87%
STR
119
1.8%
CYP71
117
1.77%
CAD
109
1.65%
CAS
108
1.63%
SMT1/SMT2/SMT3
107
1.61%
LAC
92
1.39%
PYKS
91
1.37%
TPS
84
1.27%
CSE
79
1.19%
GES
78
1.18%
TRI/TRII
72
1.09%
CODM/T6ODM
71
1.07%
RAS
70
1.06%
H6H
65
0.98%
HCT
64
0.97%
IFR
60
0.91%
T16H
59
0.89%
PMT
58
0.88%
SLS
53
0.8%
SGD
51
0.77%
G8O/G8H
51
0.77%
CCR
51
0.77%
ANR
50
0.75%
COMT
43
0.65%
PAL
42
0.63%
GS
40
0.6%
CYP90D1
40
0.6%
FPPS
39
0.59%
16OMT
34
0.51%
FNS
34
0.51%
CPR
34
0.51%
BR6OX1/CYP85A1
33
0.5%
F3'5'H/CYP75A
31
0.47%
8HGO
29
0.44%
DFR
27
0.41%
NCS
26
0.39%
CHS
26
0.39%
CYP51G1
24
0.36%
7DLH
22
0.33%
IO
22
0.33%
COR
21
0.32%
F5H/CYP84A
21
0.32%
CPD/CYP90A1
21
0.32%
TAT
20
0.3%
BBE
18
0.27%
CNMT
15
0.23%
ANS/LDOX
15
0.23%
GGPPS
15
0.23%
TYDC_DDC
14
0.21%
LAMT
14
0.21%
SQS/FDFT1
14
0.21%
DXS
13
0.2%
MVD
13
0.2%
TDC
12
0.18%
CCoAOMT
12
0.18%
HMGS
12
0.18%
AACT
12
0.18%
HPPR
11
0.17%
SMO1/SMO2
11
0.17%
ROT3/CYP90C1
11
0.17%
ADC
10
0.15%
CYP719
9
0.14%
MCT/IspD
9
0.14%
XMT_MXMT_DXMT
8
0.12%
ISY
8
0.12%
DWF1
8
0.12%
MVK
7
0.11%
HMGR
7
0.11%
CYP80B1
6
0.09%
SQE
6
0.09%
IDI
6
0.09%
PMK
6
0.09%
MDS/IspF
6
0.09%
6OMT_4OMT_SOMT
5
0.08%
MPO
5
0.08%
CHI
5
0.08%
CYP80F1
4
0.06%
ODC
4
0.06%
DET2
4
0.06%
HYD1
3
0.05%
HDS/IspG
3
0.05%
CPI1
2
0.03%
FK
2
0.03%
DWF7
2
0.03%
DXR
2
0.03%
HDR/IspH
2
0.03%
FLS
1
0.02%
DWF5
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 820 | 19 | BAHD (285) | View species results |
| Phenylpropanoid pathway | 648 | 12 | POD (312) | View species results |
| Alkaloid pathway | 618 | 25 | 7DLGT (122) | View species results |
| Flavonoid pathway | 358 | 13 | UFGT (234) | View species results |
| Rosmarinic acid pathway | 256 | 7 | C4H (126) | View species results |
| Steroid pathway | 185 | 11 | CAS (81) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2346 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 527 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Peduhic_scaffold_40397370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Peduhic_scaffold_40400800.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Peduhic_scaffold_50415740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Peduhic_scaffold_50420280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Peduhic_scaffold_50423420.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| Peduhic_scaffold_60441390.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Peduhic_scaffold_60443870.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Peduhic_scaffold_60445200.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Peduhic_scaffold_60448740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Peduhic_scaffold_70453200.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Peduhic_scaffold_80480250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Peduhic_scaffold_80481290.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Peduhic_scaffold_80483150.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Peduhic_scaffold_81430489980.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Peduhic_scaffold_90491710.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Peduhic_scaffold_90491720.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Peduhic_scaffold_90491740.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Peduhic_scaffold_90495670.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Peduhic_scaffold_90507430.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |