Phyllostachys edulis (phyllostachys_edulis)
Imported from atlas release summary for Phyllostachys edulis.
3337
Candidate Protein Records
2885
Pathway-Level Records
6626
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
6626
Family-Level Calls
BAHD
5.93%
C4H
5.81%
C3'H/CYP98A
5.78%
POD
5.27%
UGT
4.45%
7DLGT
4.01%
UFGT
3.85%
T3O
3.37%
Other Families
61.53%
More Families (97)
IFS
212
3.2%
4CL
201
3.03%
CYP76
193
2.91%
NMT
164
2.48%
F3'H/CYP75B
151
2.28%
DWF4/CYP90B1
151
2.28%
F3H
139
2.1%
BR6OX2/CYP85A2
124
1.87%
STR
119
1.8%
CYP71
117
1.77%
CAD
109
1.65%
CAS
108
1.63%
SMT1/SMT2/SMT3
107
1.61%
LAC
92
1.39%
PYKS
91
1.37%
TPS
84
1.27%
CSE
79
1.19%
GES
78
1.18%
TRI/TRII
72
1.09%
CODM/T6ODM
71
1.07%
RAS
70
1.06%
H6H
65
0.98%
HCT
64
0.97%
IFR
60
0.91%
T16H
59
0.89%
PMT
58
0.88%
SLS
53
0.8%
SGD
51
0.77%
G8O/G8H
51
0.77%
CCR
51
0.77%
ANR
50
0.75%
COMT
43
0.65%
PAL
42
0.63%
GS
40
0.6%
CYP90D1
40
0.6%
FPPS
39
0.59%
16OMT
34
0.51%
FNS
34
0.51%
CPR
34
0.51%
BR6OX1/CYP85A1
33
0.5%
F3'5'H/CYP75A
31
0.47%
8HGO
29
0.44%
DFR
27
0.41%
NCS
26
0.39%
CHS
26
0.39%
CYP51G1
24
0.36%
7DLH
22
0.33%
IO
22
0.33%
COR
21
0.32%
F5H/CYP84A
21
0.32%
CPD/CYP90A1
21
0.32%
TAT
20
0.3%
BBE
18
0.27%
CNMT
15
0.23%
ANS/LDOX
15
0.23%
GGPPS
15
0.23%
TYDC_DDC
14
0.21%
LAMT
14
0.21%
SQS/FDFT1
14
0.21%
DXS
13
0.2%
MVD
13
0.2%
TDC
12
0.18%
CCoAOMT
12
0.18%
HMGS
12
0.18%
AACT
12
0.18%
HPPR
11
0.17%
SMO1/SMO2
11
0.17%
ROT3/CYP90C1
11
0.17%
ADC
10
0.15%
CYP719
9
0.14%
MCT/IspD
9
0.14%
XMT_MXMT_DXMT
8
0.12%
ISY
8
0.12%
DWF1
8
0.12%
MVK
7
0.11%
HMGR
7
0.11%
CYP80B1
6
0.09%
SQE
6
0.09%
IDI
6
0.09%
PMK
6
0.09%
MDS/IspF
6
0.09%
6OMT_4OMT_SOMT
5
0.08%
MPO
5
0.08%
CHI
5
0.08%
CYP80F1
4
0.06%
ODC
4
0.06%
DET2
4
0.06%
HYD1
3
0.05%
HDS/IspG
3
0.05%
CPI1
2
0.03%
FK
2
0.03%
DWF7
2
0.03%
DXR
2
0.03%
HDR/IspH
2
0.03%
FLS
1
0.02%
DWF5
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 820 | 19 | BAHD (285) | View species results |
| Phenylpropanoid pathway | 648 | 12 | POD (312) | View species results |
| Alkaloid pathway | 618 | 25 | 7DLGT (122) | View species results |
| Flavonoid pathway | 358 | 13 | UFGT (234) | View species results |
| Rosmarinic acid pathway | 256 | 7 | C4H (126) | View species results |
| Steroid pathway | 185 | 11 | CAS (81) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2346 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 527 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Peduhic_scaffold_140095120.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_140109840.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_140110860.1 | Alkaloid | PMT | low | borderline |
| Peduhic_scaffold_140116650.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_140117010.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_160173910.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_160173920.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_160173930.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_160180440.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_160185510.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_160185970.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_170210750.1 | Alkaloid | PMT | medium | borderline |
| Peduhic_scaffold_170210800.1 | Alkaloid | PMT | medium | borderline |
| Peduhic_scaffold_170211320.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_180220950.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_180222830.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_180233880.1 | Alkaloid | PMT | low | borderline |
| Peduhic_scaffold_180234820.1 | Alkaloid | PMT | low | borderline |
| Peduhic_scaffold_190238800.1 | Alkaloid | PMT | low | borderline |
| Peduhic_scaffold_200257880.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_20244530.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_230334450.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_230334500.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_230334640.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_30369760.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_30377230.1 | Alkaloid | PMT | low | borderline |
| Peduhic_scaffold_40403710.1 | Alkaloid | PMT | medium | borderline |
| Peduhic_scaffold_40408280.1 | Alkaloid | PMT | low | borderline |
| Peduhic_scaffold_46050410880.1 | Alkaloid | PMT | low | borderline |
| Peduhic_scaffold_50419410.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_60442630.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_60442640.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_60442670.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_60444840.1 | Alkaloid | PMT | medium | borderline |
| Peduhic_scaffold_60447430.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_70450940.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_70452100.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_80473980.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_80474020.1 | Alkaloid | PMT | low | borderline |
| Peduhic_scaffold_80482480.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_80482510.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_80482530.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_80485370.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_80488620.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_90494300.1 | Alkaloid | PMT | medium | pass |
| Peduhic_scaffold_100014250.1 | Alkaloid | PYKS | low | borderline |
| Peduhic_scaffold_100015260.1 | Alkaloid | PYKS | high | pass |
| Peduhic_scaffold_100022270.1 | Alkaloid | PYKS | medium | pass |
| Peduhic_scaffold_110027860.1 | Alkaloid | PYKS | high | pass |
| Peduhic_scaffold_110027890.1 | Alkaloid | PYKS | high | pass |