PlantSME Plant secondary metabolism enzyme database

Plagiomnium ciliare (plagiomnium_ciliare)

Imported from atlas release summary for Plagiomnium ciliare.

775
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.87% Phenylpropanoid pathway 22.84% Alkaloid pathway 20.9% Flavonoid pathway 14.06% Rosmarinic acid pathway 9.16% Steroid pathway 5.16%
Family Distribution
C4H 6.56% BAHD 6.1% C3'H/CYP98A 5.85% CYP76 4.82% POD 4.51% 4CL 4.46% NMT 3.69% UGT 2.97%
Other Families 61.03%
More Families (96)
IFS 57 2.92% UFGT 56 2.87% 7DLGT 55 2.82% STR 47 2.41% F3H 44 2.26% BR6OX2/CYP85A2 42 2.15% F3'H/CYP75B 38 1.95% DWF4/CYP90B1 38 1.95% T3O 37 1.9% PAL 36 1.85% IFR 35 1.79% GS 33 1.69% IO 31 1.59% PYKS 30 1.54% CODM/T6ODM 24 1.23% T16H 23 1.18% CAD 23 1.18% SMT1/SMT2/SMT3 23 1.18% HCT 22 1.13% CHS 21 1.08% H6H 19 0.97% F3'5'H/CYP75A 19 0.97% CYP71 19 0.97% G8O/G8H 16 0.82% TRI/TRII 15 0.77% COMT 15 0.77% 8HGO 14 0.72% ANR 14 0.72% RAS 14 0.72% SLS 13 0.67% CAS 13 0.67% CNMT 12 0.62% NCS 11 0.56% FNS 11 0.56% CSE 11 0.56% LAC 11 0.56% 7DLH 10 0.51% TAT 10 0.51% CPD/CYP90A1 10 0.51% CYP90D1 10 0.51% SGD 9 0.46% MPO 9 0.46% 16OMT 9 0.46% LAMT 8 0.41% PMT 8 0.41% BR6OX1/CYP85A1 8 0.41% DXS 7 0.36% GGPPS 7 0.36% BBE 6 0.31% CYP80B1 6 0.31% CCR 6 0.31% CPI1 6 0.31% TPS 6 0.31% COR 5 0.26% CYP80F1 5 0.26% CPR 5 0.26% DET2 5 0.26% AACT 5 0.26% GES 4 0.21% TDC 4 0.21% DFR 4 0.21% SQS/FDFT1 4 0.21% DXR 4 0.21% FPPS 4 0.21% CYP719 3 0.15% 6OMT_4OMT_SOMT 3 0.15% TYDC_DDC 3 0.15% F5H/CYP84A 3 0.15% ROT3/CYP90C1 3 0.15% SQE 3 0.15% DWF5 3 0.15% MVD 3 0.15% MVK 3 0.15% HDS/IspG 3 0.15% ADC 2 0.1% CHI 2 0.1% FLS 2 0.1% CCoAOMT 2 0.1% CYP51G1 2 0.1% SMO1/SMO2 2 0.1% DWF1 2 0.1% HYD1 2 0.1% HMGS 2 0.1% IDI 2 0.1% MCT/IspD 2 0.1% HMGR 2 0.1% ISY 1 0.05% ANS/LDOX 1 0.05% HPPR 1 0.05% DWF7 1 0.05% FK 1 0.05% HDR/IspH 1 0.05% CMK/IspE 1 0.05% MDS/IspF 1 0.05% GPPS 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 216 19 BAHD (73) View species results
Phenylpropanoid pathway 177 11 POD (83) View species results
Alkaloid pathway 162 21 7DLGT (34) View species results
Flavonoid pathway 109 9 UFGT (51) View species results
Rosmarinic acid pathway 71 7 C4H (30) View species results
Steroid pathway 40 13 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 729 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 155 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FNS
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Gene Pathway Family Confidence Status Best Target
Pcil2520017290 Flavonoid FNS medium borderline FNS__00004__sp_Q7XZQ8_FNSI_PETCR
Pcil2692750026670 Flavonoid FNS medium borderline FNS__00005__sp_Q9XGT9_C93B2_GERHY
Pcil2934970046060 Flavonoid FNS medium borderline FNS__00005__sp_Q9XGT9_C93B2_GERHY
Pcil2939380047540 Flavonoid FNS medium borderline FNS__00002__sp_P93149_C93B1_GLYEC
Pcil2995550055610 Flavonoid FNS medium borderline FNS__00001__sp_E9KBR8_C9B16_SOYBN
Pcil3033470068600 Flavonoid FNS medium borderline FNS__00005__sp_Q9XGT9_C93B2_GERHY
Pcil3076600112280 Flavonoid FNS medium borderline FNS__00002__sp_P93149_C93B1_GLYEC
Pcil3095700150500 Flavonoid FNS medium borderline FNS__00005__sp_Q9XGT9_C93B2_GERHY
Pcil3108290190860 Flavonoid FNS medium borderline FNS__00005__sp_Q9XGT9_C93B2_GERHY
Pcil3118690233420 Flavonoid FNS medium borderline FNS__00001__sp_E9KBR8_C9B16_SOYBN
Pcil3135570303680 Flavonoid FNS medium borderline FNS__00001__sp_E9KBR8_C9B16_SOYBN