PlantSME Plant secondary metabolism enzyme database

Plagiomnium ciliare (plagiomnium_ciliare)

Imported from atlas release summary for Plagiomnium ciliare.

775
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.87% Phenylpropanoid pathway 22.84% Alkaloid pathway 20.9% Flavonoid pathway 14.06% Rosmarinic acid pathway 9.16% Steroid pathway 5.16%
Family Distribution
C4H 6.56% BAHD 6.1% C3'H/CYP98A 5.85% CYP76 4.82% POD 4.51% 4CL 4.46% NMT 3.69% UGT 2.97%
Other Families 61.03%
More Families (96)
IFS 57 2.92% UFGT 56 2.87% 7DLGT 55 2.82% STR 47 2.41% F3H 44 2.26% BR6OX2/CYP85A2 42 2.15% F3'H/CYP75B 38 1.95% DWF4/CYP90B1 38 1.95% T3O 37 1.9% PAL 36 1.85% IFR 35 1.79% GS 33 1.69% IO 31 1.59% PYKS 30 1.54% CODM/T6ODM 24 1.23% T16H 23 1.18% CAD 23 1.18% SMT1/SMT2/SMT3 23 1.18% HCT 22 1.13% CHS 21 1.08% H6H 19 0.97% F3'5'H/CYP75A 19 0.97% CYP71 19 0.97% G8O/G8H 16 0.82% TRI/TRII 15 0.77% COMT 15 0.77% 8HGO 14 0.72% ANR 14 0.72% RAS 14 0.72% SLS 13 0.67% CAS 13 0.67% CNMT 12 0.62% NCS 11 0.56% FNS 11 0.56% CSE 11 0.56% LAC 11 0.56% 7DLH 10 0.51% TAT 10 0.51% CPD/CYP90A1 10 0.51% CYP90D1 10 0.51% SGD 9 0.46% MPO 9 0.46% 16OMT 9 0.46% LAMT 8 0.41% PMT 8 0.41% BR6OX1/CYP85A1 8 0.41% DXS 7 0.36% GGPPS 7 0.36% BBE 6 0.31% CYP80B1 6 0.31% CCR 6 0.31% CPI1 6 0.31% TPS 6 0.31% COR 5 0.26% CYP80F1 5 0.26% CPR 5 0.26% DET2 5 0.26% AACT 5 0.26% GES 4 0.21% TDC 4 0.21% DFR 4 0.21% SQS/FDFT1 4 0.21% DXR 4 0.21% FPPS 4 0.21% CYP719 3 0.15% 6OMT_4OMT_SOMT 3 0.15% TYDC_DDC 3 0.15% F5H/CYP84A 3 0.15% ROT3/CYP90C1 3 0.15% SQE 3 0.15% DWF5 3 0.15% MVD 3 0.15% MVK 3 0.15% HDS/IspG 3 0.15% ADC 2 0.1% CHI 2 0.1% FLS 2 0.1% CCoAOMT 2 0.1% CYP51G1 2 0.1% SMO1/SMO2 2 0.1% DWF1 2 0.1% HYD1 2 0.1% HMGS 2 0.1% IDI 2 0.1% MCT/IspD 2 0.1% HMGR 2 0.1% ISY 1 0.05% ANS/LDOX 1 0.05% HPPR 1 0.05% DWF7 1 0.05% FK 1 0.05% HDR/IspH 1 0.05% CMK/IspE 1 0.05% MDS/IspF 1 0.05% GPPS 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 216 19 BAHD (73) View species results
Phenylpropanoid pathway 177 11 POD (83) View species results
Alkaloid pathway 162 21 7DLGT (34) View species results
Flavonoid pathway 109 9 UFGT (51) View species results
Rosmarinic acid pathway 71 7 C4H (30) View species results
Steroid pathway 40 13 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 729 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 155 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
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Gene Pathway Family Confidence Status Best Target
Pcil2798730031890 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
Pcil2874560038510 Alkaloid TRI/TRII low borderline TRI_TRII__00005__sp_P50162_TRN1_DATST
Pcil3002280058900 Alkaloid TRI/TRII medium pass TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
Pcil3007200059710 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Pcil3079370116040 Alkaloid TRI/TRII low borderline TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Pcil3081870120830 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Pcil3086510128710 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Pcil3090930138660 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Pcil3094350146540 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Pcil3095230149280 Alkaloid TRI/TRII low borderline TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
Pcil3101940172250 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Pcil3101940172260 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Pcil3130660285470 Alkaloid TRI/TRII medium pass TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
Pcil4600332160 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Pcil5650338810 Alkaloid TRI/TRII low borderline TRI_TRII__00001__sp_A7DY56_TRN1_COCOF