Plagiomnium ciliare (plagiomnium_ciliare)
Imported from atlas release summary for Plagiomnium ciliare.
775
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
775
Candidate Genes
C4H
6.56%
BAHD
6.1%
C3'H/CYP98A
5.85%
CYP76
4.82%
POD
4.51%
4CL
4.46%
NMT
3.69%
UGT
2.97%
Other Families
61.03%
More Families (96)
IFS
57
2.92%
UFGT
56
2.87%
7DLGT
55
2.82%
STR
47
2.41%
F3H
44
2.26%
BR6OX2/CYP85A2
42
2.15%
F3'H/CYP75B
38
1.95%
DWF4/CYP90B1
38
1.95%
T3O
37
1.9%
PAL
36
1.85%
IFR
35
1.79%
GS
33
1.69%
IO
31
1.59%
PYKS
30
1.54%
CODM/T6ODM
24
1.23%
T16H
23
1.18%
CAD
23
1.18%
SMT1/SMT2/SMT3
23
1.18%
HCT
22
1.13%
CHS
21
1.08%
H6H
19
0.97%
F3'5'H/CYP75A
19
0.97%
CYP71
19
0.97%
G8O/G8H
16
0.82%
TRI/TRII
15
0.77%
COMT
15
0.77%
8HGO
14
0.72%
ANR
14
0.72%
RAS
14
0.72%
SLS
13
0.67%
CAS
13
0.67%
CNMT
12
0.62%
NCS
11
0.56%
FNS
11
0.56%
CSE
11
0.56%
LAC
11
0.56%
7DLH
10
0.51%
TAT
10
0.51%
CPD/CYP90A1
10
0.51%
CYP90D1
10
0.51%
SGD
9
0.46%
MPO
9
0.46%
16OMT
9
0.46%
LAMT
8
0.41%
PMT
8
0.41%
BR6OX1/CYP85A1
8
0.41%
DXS
7
0.36%
GGPPS
7
0.36%
BBE
6
0.31%
CYP80B1
6
0.31%
CCR
6
0.31%
CPI1
6
0.31%
TPS
6
0.31%
COR
5
0.26%
CYP80F1
5
0.26%
CPR
5
0.26%
DET2
5
0.26%
AACT
5
0.26%
GES
4
0.21%
TDC
4
0.21%
DFR
4
0.21%
SQS/FDFT1
4
0.21%
DXR
4
0.21%
FPPS
4
0.21%
CYP719
3
0.15%
6OMT_4OMT_SOMT
3
0.15%
TYDC_DDC
3
0.15%
F5H/CYP84A
3
0.15%
ROT3/CYP90C1
3
0.15%
SQE
3
0.15%
DWF5
3
0.15%
MVD
3
0.15%
MVK
3
0.15%
HDS/IspG
3
0.15%
ADC
2
0.1%
CHI
2
0.1%
FLS
2
0.1%
CCoAOMT
2
0.1%
CYP51G1
2
0.1%
SMO1/SMO2
2
0.1%
DWF1
2
0.1%
HYD1
2
0.1%
HMGS
2
0.1%
IDI
2
0.1%
MCT/IspD
2
0.1%
HMGR
2
0.1%
ISY
1
0.05%
ANS/LDOX
1
0.05%
HPPR
1
0.05%
DWF7
1
0.05%
FK
1
0.05%
HDR/IspH
1
0.05%
CMK/IspE
1
0.05%
MDS/IspF
1
0.05%
GPPS
1
0.05%
PMK
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 216 | 19 | BAHD (73) | View species results |
| Phenylpropanoid pathway | 177 | 11 | POD (83) | View species results |
| Alkaloid pathway | 162 | 21 | 7DLGT (34) | View species results |
| Flavonoid pathway | 109 | 9 | UFGT (51) | View species results |
| Rosmarinic acid pathway | 71 | 7 | C4H (30) | View species results |
| Steroid pathway | 40 | 13 | CAS (13) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 729 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 155 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Pcil3123110252240 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Pcil3123570253590 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Pcil3123810254870 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Pcil3124380258090 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| Pcil3124850260250 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Pcil3126770268630 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Pcil3127110269900 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Pcil3127140269950 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Pcil3128070273740 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Pcil3129850281640 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Pcil3130980287310 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Pcil3132850295330 | Alkaloid | NMT | medium | borderline | NMT__00057__sp_Q9FR44_PEAM1_ARATH |
| Pcil3137000306490 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Pcil3253770314080 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Pcil3253780314110 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Pcil3690325160 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Pcil3700325230 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Pcil4790334120 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Pcil5340337630 | Alkaloid | NMT | medium | borderline | NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB |
| Pcil5340337640 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Pcil5340337650 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Pcil5350337830 | Alkaloid | NMT | medium | borderline | NMT__00043__sp_Q8H0D2_DXMT1_COFAR |