Plagiomnium ciliare (plagiomnium_ciliare)
Imported from atlas release summary for Plagiomnium ciliare.
1013
Candidate Protein Records
775
Pathway-Level Records
1950
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
1950
Family-Level Calls
C4H
6.56%
BAHD
6.1%
C3'H/CYP98A
5.85%
CYP76
4.82%
POD
4.51%
4CL
4.46%
NMT
3.69%
UGT
2.97%
Other Families
61.03%
More Families (96)
IFS
57
2.92%
UFGT
56
2.87%
7DLGT
55
2.82%
STR
47
2.41%
F3H
44
2.26%
BR6OX2/CYP85A2
42
2.15%
F3'H/CYP75B
38
1.95%
DWF4/CYP90B1
38
1.95%
T3O
37
1.9%
PAL
36
1.85%
IFR
35
1.79%
GS
33
1.69%
IO
31
1.59%
PYKS
30
1.54%
CODM/T6ODM
24
1.23%
T16H
23
1.18%
CAD
23
1.18%
SMT1/SMT2/SMT3
23
1.18%
HCT
22
1.13%
CHS
21
1.08%
H6H
19
0.97%
F3'5'H/CYP75A
19
0.97%
CYP71
19
0.97%
G8O/G8H
16
0.82%
TRI/TRII
15
0.77%
COMT
15
0.77%
8HGO
14
0.72%
ANR
14
0.72%
RAS
14
0.72%
SLS
13
0.67%
CAS
13
0.67%
CNMT
12
0.62%
NCS
11
0.56%
FNS
11
0.56%
CSE
11
0.56%
LAC
11
0.56%
7DLH
10
0.51%
TAT
10
0.51%
CPD/CYP90A1
10
0.51%
CYP90D1
10
0.51%
SGD
9
0.46%
MPO
9
0.46%
16OMT
9
0.46%
LAMT
8
0.41%
PMT
8
0.41%
BR6OX1/CYP85A1
8
0.41%
DXS
7
0.36%
GGPPS
7
0.36%
BBE
6
0.31%
CYP80B1
6
0.31%
CCR
6
0.31%
CPI1
6
0.31%
TPS
6
0.31%
COR
5
0.26%
CYP80F1
5
0.26%
CPR
5
0.26%
DET2
5
0.26%
AACT
5
0.26%
GES
4
0.21%
TDC
4
0.21%
DFR
4
0.21%
SQS/FDFT1
4
0.21%
DXR
4
0.21%
FPPS
4
0.21%
CYP719
3
0.15%
6OMT_4OMT_SOMT
3
0.15%
TYDC_DDC
3
0.15%
F5H/CYP84A
3
0.15%
ROT3/CYP90C1
3
0.15%
SQE
3
0.15%
DWF5
3
0.15%
MVD
3
0.15%
MVK
3
0.15%
HDS/IspG
3
0.15%
ADC
2
0.1%
CHI
2
0.1%
FLS
2
0.1%
CCoAOMT
2
0.1%
CYP51G1
2
0.1%
SMO1/SMO2
2
0.1%
DWF1
2
0.1%
HYD1
2
0.1%
HMGS
2
0.1%
IDI
2
0.1%
MCT/IspD
2
0.1%
HMGR
2
0.1%
ISY
1
0.05%
ANS/LDOX
1
0.05%
HPPR
1
0.05%
DWF7
1
0.05%
FK
1
0.05%
HDR/IspH
1
0.05%
CMK/IspE
1
0.05%
MDS/IspF
1
0.05%
GPPS
1
0.05%
PMK
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 216 | 19 | BAHD (73) | View species results |
| Phenylpropanoid pathway | 177 | 11 | POD (83) | View species results |
| Alkaloid pathway | 162 | 21 | 7DLGT (34) | View species results |
| Flavonoid pathway | 109 | 9 | UFGT (51) | View species results |
| Rosmarinic acid pathway | 71 | 7 | C4H (30) | View species results |
| Steroid pathway | 40 | 13 | CAS (13) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 729 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 155 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Pcil3111500201490 | Alkaloid | SGD | low | borderline |
| Pcil3118820234230 | Alkaloid | SGD | low | borderline |
| Pcil3121810246630 | Alkaloid | SGD | medium | pass |
| Pcil3134600300660 | Alkaloid | SGD | medium | pass |
| Pcil3600324160 | Alkaloid | SGD | medium | pass |
| Pcil2692750026670 | Alkaloid | SLS | medium | borderline |
| Pcil2934970046060 | Alkaloid | SLS | medium | borderline |
| Pcil3076600112280 | Alkaloid | SLS | medium | borderline |
| Pcil3094730147780 | Alkaloid | SLS | medium | borderline |
| Pcil3104680180110 | Alkaloid | SLS | medium | borderline |
| Pcil3108290190860 | Alkaloid | SLS | medium | borderline |
| Pcil3113220208260 | Alkaloid | SLS | medium | borderline |
| Pcil3113220208280 | Alkaloid | SLS | medium | borderline |
| Pcil3121880246980 | Alkaloid | SLS | medium | borderline |
| Pcil3122020247680 | Alkaloid | SLS | medium | borderline |
| Pcil3127820272470 | Alkaloid | SLS | medium | borderline |
| Pcil3134070298860 | Alkaloid | SLS | medium | borderline |
| Pcil3135570303670 | Alkaloid | SLS | low | borderline |
| Pcil1910006750 | Alkaloid | STR | low | borderline |
| Pcil2661380021470 | Alkaloid | STR | low | borderline |
| Pcil2690430026150 | Alkaloid | STR | low | borderline |
| Pcil2796870031780 | Alkaloid | STR | low | borderline |
| Pcil2875670039350 | Alkaloid | STR | low | borderline |
| Pcil2876620040070 | Alkaloid | STR | low | borderline |
| Pcil2881430041060 | Alkaloid | STR | medium | pass |
| Pcil2949310049020 | Alkaloid | STR | low | borderline |
| Pcil3010061460 | Alkaloid | STR | low | borderline |
| Pcil3045010077390 | Alkaloid | STR | medium | pass |
| Pcil3057750085700 | Alkaloid | STR | low | borderline |
| Pcil3057750085710 | Alkaloid | STR | medium | pass |
| Pcil3065390093840 | Alkaloid | STR | medium | pass |
| Pcil3066290095390 | Alkaloid | STR | medium | pass |
| Pcil3069460100960 | Alkaloid | STR | medium | pass |
| Pcil3069600101340 | Alkaloid | STR | low | borderline |
| Pcil3071050103180 | Alkaloid | STR | low | borderline |
| Pcil3076600112260 | Alkaloid | STR | low | borderline |
| Pcil3076600112270 | Alkaloid | STR | low | borderline |
| Pcil3081430119800 | Alkaloid | STR | low | borderline |
| Pcil3087750131350 | Alkaloid | STR | low | borderline |
| Pcil3087770131400 | Alkaloid | STR | low | borderline |
| Pcil3095740150650 | Alkaloid | STR | low | borderline |
| Pcil3098870161130 | Alkaloid | STR | low | borderline |
| Pcil3098870161150 | Alkaloid | STR | low | borderline |
| Pcil3099980164800 | Alkaloid | STR | low | borderline |
| Pcil3104450179510 | Alkaloid | STR | low | borderline |
| Pcil3105820183870 | Alkaloid | STR | low | borderline |
| Pcil3107000187480 | Alkaloid | STR | low | borderline |
| Pcil3107370188320 | Alkaloid | STR | low | borderline |
| Pcil3111140200220 | Alkaloid | STR | medium | pass |
| Pcil3113760210620 | Alkaloid | STR | medium | pass |