PlantSME Plant secondary metabolism enzyme database

Pogonatum subfuscatum (pogonatum_subfuscatum)

Imported from atlas release summary for Pogonatum subfuscatum.

601
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 25.79% Phenylpropanoid pathway 24.79% Alkaloid pathway 18.64% Rosmarinic acid pathway 13.14% Flavonoid pathway 11.48% Steroid pathway 6.16%
Family Distribution
C4H 8.35% C3'H/CYP98A 6.44% BAHD 5.25% CYP76 5.25% 4CL 4.47% POD 4.18% NMT 3.52% IFS 3.1%
Other Families 59.43%
More Families (94)
T3O 48 2.86% PAL 48 2.86% BR6OX2/CYP85A2 45 2.68% DWF4/CYP90B1 44 2.63% F3'H/CYP75B 43 2.57% STR 41 2.45% F3H 41 2.45% IFR 33 1.97% GS 30 1.79% CODM/T6ODM 29 1.73% PYKS 28 1.67% UGT 26 1.55% T16H 25 1.49% 7DLGT 23 1.37% UFGT 23 1.37% CYP71 22 1.31% SMT1/SMT2/SMT3 18 1.07% TRI/TRII 17 1.01% IO 17 1.01% CHS 17 1.01% F3'5'H/CYP75A 15 0.89% SGD 14 0.84% H6H 14 0.84% CAD 14 0.84% LAC 14 0.84% COMT 14 0.84% SLS 13 0.78% G8O/G8H 12 0.72% HCT 12 0.72% CAS 12 0.72% RAS 11 0.66% FNS 10 0.6% BBE 9 0.54% CSE 9 0.54% 16OMT 8 0.48% AACT 8 0.48% CNMT 7 0.42% NCS 7 0.42% DFR 7 0.42% F5H/CYP84A 7 0.42% CCR 7 0.42% ROT3/CYP90C1 7 0.42% CPD/CYP90A1 7 0.42% CYP80B1 6 0.36% 8HGO 6 0.36% PMT 6 0.36% CYP90D1 6 0.36% BR6OX1/CYP85A1 6 0.36% MPO 5 0.3% ANR 5 0.3% CPR 5 0.3% GGPPS 5 0.3% CYP719 4 0.24% 7DLH 4 0.24% CHI 4 0.24% TAT 4 0.24% SQS/FDFT1 4 0.24% SMO1/SMO2 4 0.24% MVK 4 0.24% DXS 4 0.24% LAMT 3 0.18% TDC 3 0.18% ANS/LDOX 3 0.18% DET2 3 0.18% DWF5 3 0.18% ADC 2 0.12% TYDC_DDC 2 0.12% COR 2 0.12% ISY 2 0.12% ODC 2 0.12% CCoAOMT 2 0.12% FK 2 0.12% CYP51G1 2 0.12% DWF7 2 0.12% DWF1 2 0.12% HMGR 2 0.12% MVD 2 0.12% IDI 2 0.12% FPPS 2 0.12% XMT_MXMT_DXMT 1 0.06% 6OMT_4OMT_SOMT 1 0.06% HPPR 1 0.06% HYD1 1 0.06% SQE 1 0.06% CPI1 1 0.06% TPS 1 0.06% PMK 1 0.06% MCT/IspD 1 0.06% CMK/IspE 1 0.06% HDS/IspG 1 0.06% HMGS 1 0.06% MDS/IspF 1 0.06% HDR/IspH 1 0.06% DXR 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 155 18 BAHD (62) View species results
Phenylpropanoid pathway 149 11 POD (66) View species results
Alkaloid pathway 112 18 NMT (19) View species results
Rosmarinic acid pathway 79 7 C4H (41) View species results
Flavonoid pathway 69 11 UFGT (23) View species results
Steroid pathway 37 13 CAS (12) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 721 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 111 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
Psubff1007360021090 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Psubff230071520 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Psubff2950082960 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Psubff2950083010 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Psubff2950083020 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Psubff2950083030 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Psubff2950083040 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Psubff2980083520 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Psubff3890100380 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Psubff510128390 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Psubff5580140220 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
Psubff8510211610 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Psubff8600213220 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Psubff8990224400 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH