PlantSME Plant secondary metabolism enzyme database

Pogonatum subfuscatum (pogonatum_subfuscatum)

Imported from atlas release summary for Pogonatum subfuscatum.

601
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 25.79% Phenylpropanoid pathway 24.79% Alkaloid pathway 18.64% Rosmarinic acid pathway 13.14% Flavonoid pathway 11.48% Steroid pathway 6.16%
Family Distribution
C4H 8.35% C3'H/CYP98A 6.44% BAHD 5.25% CYP76 5.25% 4CL 4.47% POD 4.18% NMT 3.52% IFS 3.1%
Other Families 59.43%
More Families (94)
T3O 48 2.86% PAL 48 2.86% BR6OX2/CYP85A2 45 2.68% DWF4/CYP90B1 44 2.63% F3'H/CYP75B 43 2.57% STR 41 2.45% F3H 41 2.45% IFR 33 1.97% GS 30 1.79% CODM/T6ODM 29 1.73% PYKS 28 1.67% UGT 26 1.55% T16H 25 1.49% 7DLGT 23 1.37% UFGT 23 1.37% CYP71 22 1.31% SMT1/SMT2/SMT3 18 1.07% TRI/TRII 17 1.01% IO 17 1.01% CHS 17 1.01% F3'5'H/CYP75A 15 0.89% SGD 14 0.84% H6H 14 0.84% CAD 14 0.84% LAC 14 0.84% COMT 14 0.84% SLS 13 0.78% G8O/G8H 12 0.72% HCT 12 0.72% CAS 12 0.72% RAS 11 0.66% FNS 10 0.6% BBE 9 0.54% CSE 9 0.54% 16OMT 8 0.48% AACT 8 0.48% CNMT 7 0.42% NCS 7 0.42% DFR 7 0.42% F5H/CYP84A 7 0.42% CCR 7 0.42% ROT3/CYP90C1 7 0.42% CPD/CYP90A1 7 0.42% CYP80B1 6 0.36% 8HGO 6 0.36% PMT 6 0.36% CYP90D1 6 0.36% BR6OX1/CYP85A1 6 0.36% MPO 5 0.3% ANR 5 0.3% CPR 5 0.3% GGPPS 5 0.3% CYP719 4 0.24% 7DLH 4 0.24% CHI 4 0.24% TAT 4 0.24% SQS/FDFT1 4 0.24% SMO1/SMO2 4 0.24% MVK 4 0.24% DXS 4 0.24% LAMT 3 0.18% TDC 3 0.18% ANS/LDOX 3 0.18% DET2 3 0.18% DWF5 3 0.18% ADC 2 0.12% TYDC_DDC 2 0.12% COR 2 0.12% ISY 2 0.12% ODC 2 0.12% CCoAOMT 2 0.12% FK 2 0.12% CYP51G1 2 0.12% DWF7 2 0.12% DWF1 2 0.12% HMGR 2 0.12% MVD 2 0.12% IDI 2 0.12% FPPS 2 0.12% XMT_MXMT_DXMT 1 0.06% 6OMT_4OMT_SOMT 1 0.06% HPPR 1 0.06% HYD1 1 0.06% SQE 1 0.06% CPI1 1 0.06% TPS 1 0.06% PMK 1 0.06% MCT/IspD 1 0.06% CMK/IspE 1 0.06% HDS/IspG 1 0.06% HMGS 1 0.06% MDS/IspF 1 0.06% HDR/IspH 1 0.06% DXR 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 155 18 BAHD (62) View species results
Phenylpropanoid pathway 149 11 POD (66) View species results
Alkaloid pathway 112 18 NMT (19) View species results
Rosmarinic acid pathway 79 7 C4H (41) View species results
Flavonoid pathway 69 11 UFGT (23) View species results
Steroid pathway 37 13 CAS (12) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 721 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 111 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status Best Target
Psubff1006760019020 Flavonoid PAL low borderline PAL__00003__sp_P45724_PAL2_ARATH
Psubff1007630022240 Flavonoid PAL low borderline PAL__00002__sp_P35510_PAL1_ARATH
Psubff1007950023850 Flavonoid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
Psubff1009450030840 Flavonoid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Psubff1009450030880 Flavonoid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
Psubff1253300045910 Flavonoid PAL low borderline PAL__00002__sp_P35510_PAL1_ARATH
Psubff1253320045940 Flavonoid PAL low borderline PAL__00002__sp_P35510_PAL1_ARATH
Psubff1260046240 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Psubff2330072290 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Psubff2570077070 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Psubff2700079020 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Psubff3470092930 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Psubff3800099160 Flavonoid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
Psubff7790194430 Flavonoid PAL low borderline PAL__00002__sp_P35510_PAL1_ARATH
Psubff986120245790 Flavonoid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Psubff986120245800 Flavonoid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Psubff1006760019020 Phenylpropanoid PAL low borderline PAL__00003__sp_P45724_PAL2_ARATH
Psubff1007630022240 Phenylpropanoid PAL low borderline PAL__00002__sp_P35510_PAL1_ARATH
Psubff1007950023850 Phenylpropanoid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
Psubff1009450030840 Phenylpropanoid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Psubff1009450030880 Phenylpropanoid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
Psubff1253300045910 Phenylpropanoid PAL low borderline PAL__00002__sp_P35510_PAL1_ARATH
Psubff1253320045940 Phenylpropanoid PAL low borderline PAL__00002__sp_P35510_PAL1_ARATH
Psubff1260046240 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Psubff2330072290 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Psubff2570077070 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Psubff2700079020 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Psubff3470092930 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Psubff3800099160 Phenylpropanoid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
Psubff7790194430 Phenylpropanoid PAL low borderline PAL__00002__sp_P35510_PAL1_ARATH
Psubff986120245790 Phenylpropanoid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Psubff986120245800 Phenylpropanoid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Psubff1006760019020 Rosmarinic Acid PAL low borderline PAL__00003__sp_P45724_PAL2_ARATH
Psubff1007630022240 Rosmarinic Acid PAL low borderline PAL__00002__sp_P35510_PAL1_ARATH
Psubff1007950023850 Rosmarinic Acid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
Psubff1009450030840 Rosmarinic Acid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Psubff1009450030880 Rosmarinic Acid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
Psubff1253300045910 Rosmarinic Acid PAL low borderline PAL__00002__sp_P35510_PAL1_ARATH
Psubff1253320045940 Rosmarinic Acid PAL low borderline PAL__00002__sp_P35510_PAL1_ARATH
Psubff1260046240 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Psubff2330072290 Rosmarinic Acid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Psubff2570077070 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Psubff2700079020 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Psubff3470092930 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Psubff3800099160 Rosmarinic Acid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
Psubff7790194430 Rosmarinic Acid PAL low borderline PAL__00002__sp_P35510_PAL1_ARATH
Psubff986120245790 Rosmarinic Acid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Psubff986120245800 Rosmarinic Acid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH