Pogonatum subfuscatum (pogonatum_subfuscatum)
Imported from atlas release summary for Pogonatum subfuscatum.
601
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
601
Candidate Genes
C4H
8.35%
C3'H/CYP98A
6.44%
BAHD
5.25%
CYP76
5.25%
4CL
4.47%
POD
4.18%
NMT
3.52%
IFS
3.1%
Other Families
59.43%
More Families (94)
T3O
48
2.86%
PAL
48
2.86%
BR6OX2/CYP85A2
45
2.68%
DWF4/CYP90B1
44
2.63%
F3'H/CYP75B
43
2.57%
STR
41
2.45%
F3H
41
2.45%
IFR
33
1.97%
GS
30
1.79%
CODM/T6ODM
29
1.73%
PYKS
28
1.67%
UGT
26
1.55%
T16H
25
1.49%
7DLGT
23
1.37%
UFGT
23
1.37%
CYP71
22
1.31%
SMT1/SMT2/SMT3
18
1.07%
TRI/TRII
17
1.01%
IO
17
1.01%
CHS
17
1.01%
F3'5'H/CYP75A
15
0.89%
SGD
14
0.84%
H6H
14
0.84%
CAD
14
0.84%
LAC
14
0.84%
COMT
14
0.84%
SLS
13
0.78%
G8O/G8H
12
0.72%
HCT
12
0.72%
CAS
12
0.72%
RAS
11
0.66%
FNS
10
0.6%
BBE
9
0.54%
CSE
9
0.54%
16OMT
8
0.48%
AACT
8
0.48%
CNMT
7
0.42%
NCS
7
0.42%
DFR
7
0.42%
F5H/CYP84A
7
0.42%
CCR
7
0.42%
ROT3/CYP90C1
7
0.42%
CPD/CYP90A1
7
0.42%
CYP80B1
6
0.36%
8HGO
6
0.36%
PMT
6
0.36%
CYP90D1
6
0.36%
BR6OX1/CYP85A1
6
0.36%
MPO
5
0.3%
ANR
5
0.3%
CPR
5
0.3%
GGPPS
5
0.3%
CYP719
4
0.24%
7DLH
4
0.24%
CHI
4
0.24%
TAT
4
0.24%
SQS/FDFT1
4
0.24%
SMO1/SMO2
4
0.24%
MVK
4
0.24%
DXS
4
0.24%
LAMT
3
0.18%
TDC
3
0.18%
ANS/LDOX
3
0.18%
DET2
3
0.18%
DWF5
3
0.18%
ADC
2
0.12%
TYDC_DDC
2
0.12%
COR
2
0.12%
ISY
2
0.12%
ODC
2
0.12%
CCoAOMT
2
0.12%
FK
2
0.12%
CYP51G1
2
0.12%
DWF7
2
0.12%
DWF1
2
0.12%
HMGR
2
0.12%
MVD
2
0.12%
IDI
2
0.12%
FPPS
2
0.12%
XMT_MXMT_DXMT
1
0.06%
6OMT_4OMT_SOMT
1
0.06%
HPPR
1
0.06%
HYD1
1
0.06%
SQE
1
0.06%
CPI1
1
0.06%
TPS
1
0.06%
PMK
1
0.06%
MCT/IspD
1
0.06%
CMK/IspE
1
0.06%
HDS/IspG
1
0.06%
HMGS
1
0.06%
MDS/IspF
1
0.06%
HDR/IspH
1
0.06%
DXR
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 155 | 18 | BAHD (62) | View species results |
| Phenylpropanoid pathway | 149 | 11 | POD (66) | View species results |
| Alkaloid pathway | 112 | 18 | NMT (19) | View species results |
| Rosmarinic acid pathway | 79 | 7 | C4H (41) | View species results |
| Flavonoid pathway | 69 | 11 | UFGT (23) | View species results |
| Steroid pathway | 37 | 13 | CAS (12) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 721 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 111 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Psubff00000140 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff00000150 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff1003140008530 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Psubff1008220025080 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff1010250034530 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff1010630036270 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff1010690036410 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff1307890047450 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff1307910047460 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff1600057320 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff1650058080 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff2070067340 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Psubff2070067350 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Psubff2310072000 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff2710079410 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff3130086690 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Psubff380099080 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff4000103260 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff4850120780 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Psubff4920122870 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff4990124170 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff50124230 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff50124460 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff530133430 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Psubff5670142450 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff5970149870 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff6000151930 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff7080179010 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff7270182790 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff7380185170 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff7510187660 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff7610191440 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff7880196640 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff850210950 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff8680215530 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff8710216620 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Psubff956740235420 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff964200237810 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff993560251920 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psubff995950255180 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Psubff998940258980 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |