PlantSME Plant secondary metabolism enzyme database

Polytrichastrum ohioense (polytrichastrum_ohioense)

Imported from atlas release summary for Polytrichastrum ohioense.

1044
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.77% Terpenoid pathway 24.14% Alkaloid pathway 21.65% Rosmarinic acid pathway 12.16% Flavonoid pathway 11.69% Steroid pathway 4.6%
Family Distribution
C4H 7.7% C3'H/CYP98A 6.37% CYP76 5.32% BAHD 4.82% 4CL 4.75% NMT 4.17% POD 3.99% IFS 3.13%
Other Families 59.75%
More Families (95)
F3H 78 2.81% PAL 78 2.81% DWF4/CYP90B1 76 2.73% BR6OX2/CYP85A2 71 2.55% T3O 69 2.48% STR 59 2.12% CODM/T6ODM 52 1.87% IFR 52 1.87% PYKS 48 1.73% F3'H/CYP75B 48 1.73% GS 47 1.69% UGT 47 1.69% 7DLGT 42 1.51% H6H 39 1.4% UFGT 39 1.4% G8O/G8H 38 1.37% IO 36 1.29% F3'5'H/CYP75A 35 1.26% LAC 35 1.26% FNS 34 1.22% CHS 33 1.19% T16H 30 1.08% SGD 28 1.01% COMT 28 1.01% SMT1/SMT2/SMT3 28 1.01% CYP71 28 1.01% TRI/TRII 22 0.79% CAD 22 0.79% 7DLH 21 0.76% CSE 20 0.72% RAS 18 0.65% HCT 17 0.61% BR6OX1/CYP85A1 16 0.58% SLS 12 0.43% DXS 12 0.43% CYP80B1 11 0.4% F5H/CYP84A 11 0.4% SQS/FDFT1 11 0.4% CPD/CYP90A1 11 0.4% BBE 10 0.36% NCS 10 0.36% CNMT 9 0.32% MPO 9 0.32% ANR 9 0.32% DFR 9 0.32% CAS 9 0.32% GGPPS 9 0.32% 16OMT 8 0.29% COR 8 0.29% ANS/LDOX 8 0.29% CCR 8 0.29% CYP719 7 0.25% 8HGO 7 0.25% HMGR 7 0.25% AACT 7 0.25% ADC 6 0.22% PMT 6 0.22% SMO1/SMO2 6 0.22% TYDC_DDC 5 0.18% CHI 5 0.18% TAT 5 0.18% CPR 5 0.18% ROT3/CYP90C1 5 0.18% DET2 5 0.18% CYP90D1 5 0.18% ODC 4 0.14% DWF5 4 0.14% MVK 4 0.14% MVD 4 0.14% TDC 3 0.11% ISY 3 0.11% FLS 3 0.11% CCoAOMT 3 0.11% HPPR 3 0.11% SQE 3 0.11% FK 3 0.11% CYP51G1 3 0.11% HYD1 3 0.11% HMGS 3 0.11% LAMT 2 0.07% 6OMT_4OMT_SOMT 2 0.07% CPI1 2 0.07% MCT/IspD 2 0.07% IDI 2 0.07% HDS/IspG 2 0.07% FPPS 2 0.07% DXR 2 0.07% MDS/IspF 2 0.07% HDR/IspH 2 0.07% XMT_MXMT_DXMT 1 0.04% DWF7 1 0.04% DWF1 1 0.04% PMK 1 0.04% CMK/IspE 1 0.04% TPS 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 269 12 POD (100) View species results
Terpenoid pathway 252 18 BAHD (94) View species results
Alkaloid pathway 226 23 NMT (50) View species results
Rosmarinic acid pathway 127 7 C4H (59) View species results
Flavonoid pathway 122 10 UFGT (36) View species results
Steroid pathway 48 13 SMT1/SMT2/SMT3 (12) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1159 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 169 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Pohi493020179040 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Pohi493600185570 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Pohi493920189090 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Pohi494130190990 Alkaloid NMT low borderline NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Pohi494130191000 Alkaloid NMT low borderline NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Pohi494130191040 Alkaloid NMT low borderline NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Pohi494130191050 Alkaloid NMT low borderline NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Pohi494650196120 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Pohi495820208850 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
Pohi496200211160 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Pohi496290211880 Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Pohi496290211910 Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Pohi496790217120 Alkaloid NMT low borderline NMT__00040__sp_Q84WW6_ASHH1_ARATH
Pohi496790217260 Alkaloid NMT low borderline NMT__00040__sp_Q84WW6_ASHH1_ARATH
Pohi497310223570 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Pohi497470224940 Alkaloid NMT low borderline NMT__00021__sp_O64827_SUVR5_ARATH
Pohi497540225700 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Pohi497670227470 Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
Pohi497770228650 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
Pohi497820228920 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Pohi498370235990 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Pohi500200250100 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Pohi501200259250 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
Pohi502170267340 Alkaloid NMT low borderline NMT__00019__sp_O22781_SUVH2_ARATH
Pohi502170267360 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Pohi502320270090 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
Pohi502380271050 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
Pohi502960276180 Alkaloid NMT low borderline NMT__00021__sp_O64827_SUVR5_ARATH
Pohi502960276210 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Pohi502960276220 Alkaloid NMT medium pass NMT__00011__sp_A9X7L0_ANMT_RUTGR
Pohi503180277990 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Pohi503510280660 Alkaloid NMT low borderline NMT__00021__sp_O64827_SUVR5_ARATH
Pohi503680282810 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Pohi503850284540 Alkaloid NMT medium pass NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Pohi503850284570 Alkaloid NMT low borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Pohi503910285050 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Pohi503920285270 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Pohi504470289410 Alkaloid NMT medium pass NMT__00068__sp_Q9XI84_RBCMT_ARATH
Pohi504480289460 Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
Pohi504480289540 Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
Pohi504560290140 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Pohi504590290340 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Pohi504640291670 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
Pohi504640291680 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
Pohi505350298580 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Pohi508060320070 Alkaloid NMT low borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Pohi508340321580 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
Pohi508390321910 Alkaloid NMT medium pass NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Pohi508630323480 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Pohi509330328310 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH