PlantSME Plant secondary metabolism enzyme database

Polytrichastrum ohioense (polytrichastrum_ohioense)

Imported from atlas release summary for Polytrichastrum ohioense.

1044
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.77% Terpenoid pathway 24.14% Alkaloid pathway 21.65% Rosmarinic acid pathway 12.16% Flavonoid pathway 11.69% Steroid pathway 4.6%
Family Distribution
C4H 7.7% C3'H/CYP98A 6.37% CYP76 5.32% BAHD 4.82% 4CL 4.75% NMT 4.17% POD 3.99% IFS 3.13%
Other Families 59.75%
More Families (95)
F3H 78 2.81% PAL 78 2.81% DWF4/CYP90B1 76 2.73% BR6OX2/CYP85A2 71 2.55% T3O 69 2.48% STR 59 2.12% CODM/T6ODM 52 1.87% IFR 52 1.87% PYKS 48 1.73% F3'H/CYP75B 48 1.73% GS 47 1.69% UGT 47 1.69% 7DLGT 42 1.51% H6H 39 1.4% UFGT 39 1.4% G8O/G8H 38 1.37% IO 36 1.29% F3'5'H/CYP75A 35 1.26% LAC 35 1.26% FNS 34 1.22% CHS 33 1.19% T16H 30 1.08% SGD 28 1.01% COMT 28 1.01% SMT1/SMT2/SMT3 28 1.01% CYP71 28 1.01% TRI/TRII 22 0.79% CAD 22 0.79% 7DLH 21 0.76% CSE 20 0.72% RAS 18 0.65% HCT 17 0.61% BR6OX1/CYP85A1 16 0.58% SLS 12 0.43% DXS 12 0.43% CYP80B1 11 0.4% F5H/CYP84A 11 0.4% SQS/FDFT1 11 0.4% CPD/CYP90A1 11 0.4% BBE 10 0.36% NCS 10 0.36% CNMT 9 0.32% MPO 9 0.32% ANR 9 0.32% DFR 9 0.32% CAS 9 0.32% GGPPS 9 0.32% 16OMT 8 0.29% COR 8 0.29% ANS/LDOX 8 0.29% CCR 8 0.29% CYP719 7 0.25% 8HGO 7 0.25% HMGR 7 0.25% AACT 7 0.25% ADC 6 0.22% PMT 6 0.22% SMO1/SMO2 6 0.22% TYDC_DDC 5 0.18% CHI 5 0.18% TAT 5 0.18% CPR 5 0.18% ROT3/CYP90C1 5 0.18% DET2 5 0.18% CYP90D1 5 0.18% ODC 4 0.14% DWF5 4 0.14% MVK 4 0.14% MVD 4 0.14% TDC 3 0.11% ISY 3 0.11% FLS 3 0.11% CCoAOMT 3 0.11% HPPR 3 0.11% SQE 3 0.11% FK 3 0.11% CYP51G1 3 0.11% HYD1 3 0.11% HMGS 3 0.11% LAMT 2 0.07% 6OMT_4OMT_SOMT 2 0.07% CPI1 2 0.07% MCT/IspD 2 0.07% IDI 2 0.07% HDS/IspG 2 0.07% FPPS 2 0.07% DXR 2 0.07% MDS/IspF 2 0.07% HDR/IspH 2 0.07% XMT_MXMT_DXMT 1 0.04% DWF7 1 0.04% DWF1 1 0.04% PMK 1 0.04% CMK/IspE 1 0.04% TPS 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 269 12 POD (100) View species results
Terpenoid pathway 252 18 BAHD (94) View species results
Alkaloid pathway 226 23 NMT (50) View species results
Rosmarinic acid pathway 127 7 C4H (59) View species results
Flavonoid pathway 122 10 UFGT (36) View species results
Steroid pathway 48 13 SMT1/SMT2/SMT3 (12) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1159 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 169 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SGD
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Gene Pathway Family Confidence Status
Pohi455160061570 Alkaloid SGD medium pass
Pohi466110070190 Alkaloid SGD medium pass
Pohi472760078300 Alkaloid SGD medium pass
Pohi473700079510 Alkaloid SGD medium pass
Pohi477630088670 Alkaloid SGD medium pass
Pohi480210097490 Alkaloid SGD medium pass
Pohi481690102700 Alkaloid SGD medium pass
Pohi484590116750 Alkaloid SGD medium pass
Pohi487180132310 Alkaloid SGD medium pass
Pohi487420133580 Alkaloid SGD medium pass
Pohi488550140100 Alkaloid SGD medium pass
Pohi490410153070 Alkaloid SGD medium pass
Pohi491050159040 Alkaloid SGD medium pass
Pohi492190170110 Alkaloid SGD medium pass
Pohi492580174170 Alkaloid SGD medium pass
Pohi496840218000 Alkaloid SGD medium pass
Pohi497510225380 Alkaloid SGD medium pass
Pohi498650238380 Alkaloid SGD low borderline
Pohi498740238870 Alkaloid SGD low borderline
Pohi499210242820 Alkaloid SGD medium pass
Pohi500430253360 Alkaloid SGD medium pass
Pohi501910264160 Alkaloid SGD low borderline
Pohi504720292290 Alkaloid SGD low borderline
Pohi504860293730 Alkaloid SGD medium pass
Pohi504860294170 Alkaloid SGD medium pass
Pohi505510300550 Alkaloid SGD medium pass
Pohi506000304270 Alkaloid SGD medium pass
Pohi509330328370 Alkaloid SGD medium pass