PlantSME Plant secondary metabolism enzyme database

Polytrichastrum ohioense (polytrichastrum_ohioense)

Imported from atlas release summary for Polytrichastrum ohioense.

1044
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.77% Terpenoid pathway 24.14% Alkaloid pathway 21.65% Rosmarinic acid pathway 12.16% Flavonoid pathway 11.69% Steroid pathway 4.6%
Family Distribution
C4H 7.7% C3'H/CYP98A 6.37% CYP76 5.32% BAHD 4.82% 4CL 4.75% NMT 4.17% POD 3.99% IFS 3.13%
Other Families 59.75%
More Families (95)
F3H 78 2.81% PAL 78 2.81% DWF4/CYP90B1 76 2.73% BR6OX2/CYP85A2 71 2.55% T3O 69 2.48% STR 59 2.12% CODM/T6ODM 52 1.87% IFR 52 1.87% PYKS 48 1.73% F3'H/CYP75B 48 1.73% GS 47 1.69% UGT 47 1.69% 7DLGT 42 1.51% H6H 39 1.4% UFGT 39 1.4% G8O/G8H 38 1.37% IO 36 1.29% F3'5'H/CYP75A 35 1.26% LAC 35 1.26% FNS 34 1.22% CHS 33 1.19% T16H 30 1.08% SGD 28 1.01% COMT 28 1.01% SMT1/SMT2/SMT3 28 1.01% CYP71 28 1.01% TRI/TRII 22 0.79% CAD 22 0.79% 7DLH 21 0.76% CSE 20 0.72% RAS 18 0.65% HCT 17 0.61% BR6OX1/CYP85A1 16 0.58% SLS 12 0.43% DXS 12 0.43% CYP80B1 11 0.4% F5H/CYP84A 11 0.4% SQS/FDFT1 11 0.4% CPD/CYP90A1 11 0.4% BBE 10 0.36% NCS 10 0.36% CNMT 9 0.32% MPO 9 0.32% ANR 9 0.32% DFR 9 0.32% CAS 9 0.32% GGPPS 9 0.32% 16OMT 8 0.29% COR 8 0.29% ANS/LDOX 8 0.29% CCR 8 0.29% CYP719 7 0.25% 8HGO 7 0.25% HMGR 7 0.25% AACT 7 0.25% ADC 6 0.22% PMT 6 0.22% SMO1/SMO2 6 0.22% TYDC_DDC 5 0.18% CHI 5 0.18% TAT 5 0.18% CPR 5 0.18% ROT3/CYP90C1 5 0.18% DET2 5 0.18% CYP90D1 5 0.18% ODC 4 0.14% DWF5 4 0.14% MVK 4 0.14% MVD 4 0.14% TDC 3 0.11% ISY 3 0.11% FLS 3 0.11% CCoAOMT 3 0.11% HPPR 3 0.11% SQE 3 0.11% FK 3 0.11% CYP51G1 3 0.11% HYD1 3 0.11% HMGS 3 0.11% LAMT 2 0.07% 6OMT_4OMT_SOMT 2 0.07% CPI1 2 0.07% MCT/IspD 2 0.07% IDI 2 0.07% HDS/IspG 2 0.07% FPPS 2 0.07% DXR 2 0.07% MDS/IspF 2 0.07% HDR/IspH 2 0.07% XMT_MXMT_DXMT 1 0.04% DWF7 1 0.04% DWF1 1 0.04% PMK 1 0.04% CMK/IspE 1 0.04% TPS 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 269 12 POD (100) View species results
Terpenoid pathway 252 18 BAHD (94) View species results
Alkaloid pathway 226 23 NMT (50) View species results
Rosmarinic acid pathway 127 7 C4H (59) View species results
Flavonoid pathway 122 10 UFGT (36) View species results
Steroid pathway 48 13 SMT1/SMT2/SMT3 (12) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1159 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 169 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
Reset
Gene Pathway Family Confidence Status Best Target
Pohi548360334410 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Pohi548370334430 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Pohi555970335270 Alkaloid NMT medium pass NMT__00017__sp_F4K1J4_ATXR7_ARATH
Pohi555980335280 Alkaloid NMT medium pass NMT__00017__sp_F4K1J4_ATXR7_ARATH
Pohi567230336510 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Pohi567250336530 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Pohi579590337930 Alkaloid NMT low borderline NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Pohi579600337940 Alkaloid NMT low borderline NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Pohi579610337950 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Pohi617380342450 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
Pohi617390342500 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
Pohi652110345780 Alkaloid NMT medium pass NMT__00030__sp_Q43088_RBCMT_PEA
Pohi652120345820 Alkaloid NMT medium pass NMT__00030__sp_Q43088_RBCMT_PEA
Pohi711010354600 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
Pohi711020354700 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Pohi730355720 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH