PlantSME Plant secondary metabolism enzyme database

Polytrichum strictum (polytrichum_strictum)

Imported from atlas release summary for Polytrichum strictum.

605
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.12% Terpenoid pathway 21.82% Alkaloid pathway 21.16% Flavonoid pathway 12.89% Rosmarinic acid pathway 12.4% Steroid pathway 5.62%
Family Distribution
C4H 7.57% C3'H/CYP98A 6.22% 4CL 5.81% CYP76 5.11% BAHD 4.82% POD 4.11% NMT 3.82% IFS 2.99%
Other Families 59.54%
More Families (95)
PAL 48 2.82% F3H 48 2.82% DWF4/CYP90B1 46 2.7% T3O 45 2.64% GS 40 2.35% STR 39 2.29% IFR 35 2.06% BR6OX2/CYP85A2 35 2.06% F3'H/CYP75B 34 2.0% CODM/T6ODM 31 1.82% UGT 26 1.53% PYKS 25 1.47% 7DLGT 24 1.41% UFGT 23 1.35% T16H 21 1.23% G8O/G8H 20 1.17% F3'5'H/CYP75A 20 1.17% IO 19 1.12% TRI/TRII 19 1.12% H6H 18 1.06% FNS 18 1.06% COMT 18 1.06% SMT1/SMT2/SMT3 18 1.06% CHS 15 0.88% CAD 15 0.88% LAC 14 0.82% CNMT 12 0.7% CPD/CYP90A1 12 0.7% BR6OX1/CYP85A1 12 0.7% CYP71 12 0.7% SGD 11 0.65% 16OMT 10 0.59% HCT 10 0.59% RAS 10 0.59% 7DLH 9 0.53% CSE 9 0.53% CAS 8 0.47% CYP719 7 0.41% ANR 7 0.41% CYP90D1 7 0.41% GGPPS 7 0.41% SLS 6 0.35% CYP80B1 6 0.35% COR 6 0.35% NCS 6 0.35% CCR 6 0.35% CPR 6 0.35% 8HGO 5 0.29% BBE 5 0.29% MPO 5 0.29% DFR 5 0.29% SQS/FDFT1 5 0.29% AACT 5 0.29% PMT 4 0.23% CHI 4 0.23% F5H/CYP84A 4 0.23% ROT3/CYP90C1 4 0.23% DET2 4 0.23% ISY 3 0.18% TDC 3 0.18% HPPR 3 0.18% TAT 3 0.18% SQE 3 0.18% SMO1/SMO2 3 0.18% CYP51G1 3 0.18% DWF1 3 0.18% DWF5 3 0.18% CMK/IspE 3 0.18% DXS 3 0.18% HMGR 3 0.18% MVK 3 0.18% 6OMT_4OMT_SOMT 2 0.12% ADC 2 0.12% LAMT 2 0.12% ODC 2 0.12% ANS/LDOX 2 0.12% CCoAOMT 2 0.12% FPPS 2 0.12% MVD 2 0.12% CYP80F1 1 0.06% GES 1 0.06% TYDC_DDC 1 0.06% FLS 1 0.06% FK 1 0.06% HYD1 1 0.06% DWF7 1 0.06% CPI1 1 0.06% TPS 1 0.06% HDR/IspH 1 0.06% MDS/IspF 1 0.06% HDS/IspG 1 0.06% IDI 1 0.06% PMK 1 0.06% MCT/IspD 1 0.06% HMGS 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 158 12 POD (65) View species results
Terpenoid pathway 132 17 BAHD (57) View species results
Alkaloid pathway 128 16 NMT (23) View species results
Flavonoid pathway 78 10 UFGT (22) View species results
Rosmarinic acid pathway 75 7 C4H (32) View species results
Steroid pathway 34 13 CAS (8) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 696 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 102 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
Reset
Gene Pathway Family Confidence Status Best Target
Pstr1361810006550 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Pstr1637340029960 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Pstr1653860033830 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Pstr1723560079470 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Pstr1731660091710 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Pstr1733250093920 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Pstr1733250093930 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Pstr1738400103190 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Pstr1742650111780 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Pstr1742650111790 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Pstr1785950203920 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Pstr1785950203930 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Pstr1787260207460 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Pstr1790160213180 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH