PlantSME Plant secondary metabolism enzyme database

Populus alba (populus_alba)

Imported from atlas release summary for Populus alba.

2170
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.89% Phenylpropanoid pathway 21.8% Alkaloid pathway 19.77% Flavonoid pathway 11.98% Rosmarinic acid pathway 7.33% Steroid pathway 7.24%
Family Distribution
C4H 6.65% BAHD 6.63% UGT 4.68% 4CL 4.2% C3'H/CYP98A 4.02% POD 3.95% 7DLGT 3.76% CYP76 3.35%
Other Families 62.77%
More Families (96)
F3H 167 3.2% IFS 163 3.12% UFGT 154 2.95% NMT 133 2.55% T3O 111 2.13% H6H 97 1.86% DWF4/CYP90B1 97 1.86% CAD 93 1.78% SMT1/SMT2/SMT3 86 1.65% FNS 85 1.63% CODM/T6ODM 83 1.59% G8O/G8H 83 1.59% STR 77 1.48% F3'H/CYP75B 76 1.46% IFR 72 1.38% LAC 71 1.36% CAS 66 1.26% BR6OX2/CYP85A2 60 1.15% T16H 58 1.11% GES 53 1.02% CSE 52 1.0% HCT 51 0.98% TPS 51 0.98% CYP71 49 0.94% PYKS 48 0.92% F5H/CYP84A 48 0.92% TAT 47 0.9% ANR 44 0.84% COMT 42 0.8% IO 41 0.79% CYP90D1 41 0.79% GS 40 0.77% SLS 40 0.77% F3'5'H/CYP75A 40 0.77% TRI/TRII 36 0.69% 16OMT 34 0.65% CCR 34 0.65% RAS 34 0.65% DFR 32 0.61% 8HGO 27 0.52% 7DLH 24 0.46% NCS 24 0.46% SGD 24 0.46% SQE 24 0.46% LAMT 23 0.44% BR6OX1/CYP85A1 23 0.44% CPD/CYP90A1 22 0.42% ISY 21 0.4% CNMT 21 0.4% CHS 20 0.38% ANS/LDOX 19 0.36% PMT 17 0.33% COR 16 0.31% MPO 15 0.29% ROT3/CYP90C1 15 0.29% CYP80B1 14 0.27% CPR 14 0.27% DET2 14 0.27% SQS/FDFT1 14 0.27% HPPR 13 0.25% GGPPS 13 0.25% AACT 12 0.23% FPPS 11 0.21% TYDC_DDC 9 0.17% CYP719 9 0.17% PAL 9 0.17% SMO1/SMO2 9 0.17% MVK 9 0.17% CCoAOMT 8 0.15% DXS 8 0.15% MVD 8 0.15% TDC 6 0.11% HMGR 6 0.11% ADC 5 0.1% CHI 5 0.1% MCT/IspD 5 0.1% CMK/IspE 5 0.1% DXR 4 0.08% IDI 4 0.08% BBE 3 0.06% CYP80F1 3 0.06% DWF5 3 0.06% DWF1 3 0.06% CYP51G1 3 0.06% DWF7 3 0.06% HDR/IspH 3 0.06% XMT_MXMT_DXMT 2 0.04% ODC 2 0.04% HYD1 2 0.04% PMK 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% HDS/IspG 2 0.04% 6OMT_4OMT_SOMT 1 0.02% CPI1 1 0.02% FK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 692 19 BAHD (266) View species results
Phenylpropanoid pathway 473 13 POD (196) View species results
Alkaloid pathway 429 25 NMT (73) View species results
Flavonoid pathway 260 14 UFGT (135) View species results
Rosmarinic acid pathway 159 7 4CL (54) View species results
Steroid pathway 157 13 CAS (60) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1752 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 431 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
GWHPAAEP001046 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
GWHPAAEP001298 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
GWHPAAEP002676 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
GWHPAAEP004493 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
GWHPAAEP032267 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
GWHPAAEP037909 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
GWHPAAEP038673 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
GWHPAAEP038674 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
GWHPAAEP038675 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH