PlantSME Plant secondary metabolism enzyme database

Populus trichocarpa (populus_trichocarpa)

Imported from atlas release summary for Populus trichocarpa.

3008
Candidate Protein Records
2612
Pathway-Level Records
6120
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 743 19 BAHD (276) View species results
Alkaloid pathway 615 20 7DLGT (125) View species results
Phenylpropanoid pathway 524 11 POD (217) View species results
Flavonoid pathway 344 10 UFGT (232) View species results
Rosmarinic acid pathway 213 7 C4H (81) View species results
Steroid pathway 173 13 CAS (86) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2251 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 456 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Potri.009G109900.2.p Rosmarinic Acid 4CL low borderline 4CL__00007__sp_Q42524_4CL1_ARATH
Potri.009G109900.3.p Rosmarinic Acid 4CL low borderline 4CL__00007__sp_Q42524_4CL1_ARATH
Potri.010G057000.1.p Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Potri.010G057000.3.p Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Potri.010G090200.1.p Rosmarinic Acid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Potri.010G141501.1.p Rosmarinic Acid 4CL low borderline 4CL__00001__sp_I3PB36_CNL_PETHY
Potri.010G230200.1.p Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Potri.011G164100.2.p Rosmarinic Acid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Potri.011G164100.3.p Rosmarinic Acid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Potri.012G094800.1.p Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Potri.012G094900.1.p Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Potri.012G095000.1.p Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Potri.013G021300.2.p Rosmarinic Acid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Potri.013G096200.1.p Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Potri.014G140900.10.p Rosmarinic Acid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Potri.014G140900.11.p Rosmarinic Acid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Potri.014G140900.6.p Rosmarinic Acid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Potri.014G140900.9.p Rosmarinic Acid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Potri.014G169400.10.p Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Potri.014G169400.8.p Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Potri.014G169600.3.p Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Potri.014G169600.4.p Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Potri.015G092300.1.p Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Potri.015G092300.2.p Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Potri.015G144700.1.p Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Potri.015G144700.5.p Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Potri.015G148500.1.p Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Potri.016G034800.1.p Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Potri.017G033600.1.p Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Potri.017G033600.2.p Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Potri.017G033600.3.p Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Potri.017G060100.1.p Rosmarinic Acid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
Potri.017G060100.3.p Rosmarinic Acid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
Potri.017G112800.1.p Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Potri.017G138350.1.p Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Potri.017G138451.1.p Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Potri.018G094200.1.p Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Potri.018G094200.3.p Rosmarinic Acid 4CL medium pass 4CL__00003__sp_M4ISH0_CCL1_HUMLU
Potri.019G049500.2.p Rosmarinic Acid 4CL medium pass 4CL__00018__sp_Q9S777_4CL3_ARATH
Potri.019G067800.1.p Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Potri.019G067900.1.p Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Potri.019G068001.2.p Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Potri.019G068100.1.p Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY