Populus trichocarpa (populus_trichocarpa)
Imported from atlas release summary for Populus trichocarpa.
3008
Candidate Protein Records
2612
Pathway-Level Records
6120
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
6120
Family-Level Calls
C4H
6.05%
C3'H/CYP98A
5.87%
BAHD
5.67%
UGT
4.12%
UFGT
3.97%
4CL
3.97%
IFS
3.95%
7DLGT
3.94%
Other Families
62.47%
More Families (97)
POD
226
3.69%
CYP76
218
3.56%
T3O
217
3.55%
NMT
208
3.4%
F3H
143
2.34%
DWF4/CYP90B1
133
2.17%
STR
116
1.9%
F3'H/CYP75B
103
1.68%
CAS
93
1.52%
CAD
92
1.5%
BR6OX2/CYP85A2
92
1.5%
CYP90D1
85
1.39%
CYP71
83
1.36%
SMT1/SMT2/SMT3
80
1.31%
LAC
78
1.27%
CODM/T6ODM
77
1.26%
TRI/TRII
74
1.21%
BBE
72
1.18%
H6H
71
1.16%
IFR
62
1.01%
HCT
62
1.01%
GES
56
0.92%
SGD
54
0.88%
CSE
53
0.87%
TPS
53
0.87%
PYKS
52
0.85%
RAS
47
0.77%
ANR
46
0.75%
COMT
46
0.75%
CCR
45
0.74%
GS
42
0.69%
IO
41
0.67%
G8O/G8H
41
0.67%
16OMT
41
0.67%
TAT
40
0.65%
7DLH
38
0.62%
BR6OX1/CYP85A1
37
0.6%
SLS
34
0.56%
CPD/CYP90A1
34
0.56%
PMT
33
0.54%
LAMT
29
0.47%
FNS
29
0.47%
NCS
28
0.46%
COR
26
0.42%
T16H
26
0.42%
F3'5'H/CYP75A
26
0.42%
F5H/CYP84A
26
0.42%
DFR
23
0.38%
PAL
21
0.34%
8HGO
20
0.33%
SQS/FDFT1
19
0.31%
CNMT
18
0.29%
ANS/LDOX
17
0.28%
SQE
16
0.26%
CYP51G1
15
0.25%
GGPPS
15
0.25%
ISY
14
0.23%
CHS
14
0.23%
DET2
14
0.23%
AACT
14
0.23%
MPO
13
0.21%
CPR
13
0.21%
ROT3/CYP90C1
12
0.2%
HDS/IspG
12
0.2%
HPPR
11
0.18%
MVD
11
0.18%
CYP719
10
0.16%
FPPS
10
0.16%
CYP80B1
8
0.13%
MVK
8
0.13%
CCoAOMT
7
0.11%
DXS
7
0.11%
SMO1/SMO2
6
0.1%
DWF1
6
0.1%
HMGR
6
0.1%
TDC
5
0.08%
TYDC_DDC
5
0.08%
DWF5
4
0.07%
MCT/IspD
4
0.07%
XMT_MXMT_DXMT
3
0.05%
CHI
3
0.05%
HMGS
3
0.05%
PMK
3
0.05%
CMK/IspE
3
0.05%
HDR/IspH
3
0.05%
IDI
3
0.05%
ODC
2
0.03%
HYD1
2
0.03%
DWF7
2
0.03%
MDS/IspF
2
0.03%
DXR
2
0.03%
ADC
1
0.02%
CYP80F1
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
FLS
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 743 | 19 | BAHD (276) | View species results |
| Alkaloid pathway | 615 | 20 | 7DLGT (125) | View species results |
| Phenylpropanoid pathway | 524 | 11 | POD (217) | View species results |
| Flavonoid pathway | 344 | 10 | UFGT (232) | View species results |
| Rosmarinic acid pathway | 213 | 7 | C4H (81) | View species results |
| Steroid pathway | 173 | 13 | CAS (86) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2251 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 456 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3'H/CYP75B
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Potri.007G074850.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.007G074900.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.007G075000.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.007G081200.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.007G087500.3.p | Flavonoid | F3'H/CYP75B | low | borderline |
| Potri.007G087500.4.p | Flavonoid | F3'H/CYP75B | low | borderline |
| Potri.009G108600.3.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.010G049250.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.010G139300.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.010G139500.3.p | Flavonoid | F3'H/CYP75B | low | borderline |
| Potri.010G139600.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.011G099200.2.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.011G130800.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.011G130850.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.011G131001.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.011G131051.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.012G096800.1.p | Flavonoid | F3'H/CYP75B | low | borderline |
| Potri.012G136600.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.012G136800.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.012G137200.3.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.012G142000.1.p | Flavonoid | F3'H/CYP75B | low | borderline |
| Potri.013G073300.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.013G076600.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.013G076700.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.013G088100.3.p | Flavonoid | F3'H/CYP75B | low | borderline |
| Potri.013G125300.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.013G157200.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.013G157400.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.014G037500.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.014G043100.1.p | Flavonoid | F3'H/CYP75B | low | borderline |
| Potri.014G052000.4.p | Flavonoid | F3'H/CYP75B | low | borderline |
| Potri.014G052000.5.p | Flavonoid | F3'H/CYP75B | low | borderline |
| Potri.014G102700.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.014G180450.1.p | Flavonoid | F3'H/CYP75B | low | borderline |
| Potri.015G028000.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.015G086900.1.p | Flavonoid | F3'H/CYP75B | low | borderline |
| Potri.015G087000.1.p | Flavonoid | F3'H/CYP75B | low | borderline |
| Potri.015G138900.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.015G138900.2.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.015G145100.1.p | Flavonoid | F3'H/CYP75B | low | borderline |
| Potri.016G137400.2.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.017G099000.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.017G114200.1.p | Flavonoid | F3'H/CYP75B | low | borderline |
| Potri.017G114200.2.p | Flavonoid | F3'H/CYP75B | low | borderline |
| Potri.017G154600.3.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.017G154600.4.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.018G062100.1.p | Flavonoid | F3'H/CYP75B | low | borderline |
| Potri.018G062100.5.p | Flavonoid | F3'H/CYP75B | low | borderline |
| Potri.018G146100.1.p | Flavonoid | F3'H/CYP75B | medium | borderline |
| Potri.019G064200.1.p | Flavonoid | F3'H/CYP75B | low | borderline |