PlantSME Plant secondary metabolism enzyme database

Populus trichocarpa (populus_trichocarpa)

Imported from atlas release summary for Populus trichocarpa.

2612
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 743 19 BAHD (276) View species results
Alkaloid pathway 615 20 7DLGT (125) View species results
Phenylpropanoid pathway 524 11 POD (217) View species results
Flavonoid pathway 344 10 UFGT (232) View species results
Rosmarinic acid pathway 213 7 C4H (81) View species results
Steroid pathway 173 13 CAS (86) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2251 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 456 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Potri.005G129800.6.p Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
Potri.005G140200.1.p Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
Potri.005G140200.3.p Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
Potri.005G182100.1.p Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Potri.005G182100.4.p Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Potri.005G182100.5.p Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Potri.005G182100.6.p Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Potri.005G183700.1.p Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Potri.005G183700.3.p Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Potri.005G183700.4.p Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Potri.005G183800.2.p Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Potri.005G195400.1.p Alkaloid NMT medium pass NMT__00040__sp_Q84WW6_ASHH1_ARATH
Potri.005G230100.1.p Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
Potri.005G245800.1.p Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Potri.005G260100.1.p Alkaloid NMT medium pass NMT__00017__sp_F4K1J4_ATXR7_ARATH
Potri.006G027600.1.p Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Potri.006G027600.2.p Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Potri.006G027600.5.p Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Potri.006G027600.6.p Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Potri.006G027600.7.p Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Potri.006G083600.4.p Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Potri.006G083600.8.p Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Potri.006G083600.9.p Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Potri.006G120000.7.p Alkaloid NMT medium borderline NMT__00018__sp_I1M2U5_NAMT1_SOYBN
Potri.006G120200.1.p Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Potri.006G120200.4.p Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Potri.006G149400.2.p Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
Potri.006G281000.1.p Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Potri.007G000300.1.p Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Potri.007G033000.1.p Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
Potri.007G033000.2.p Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
Potri.007G033000.4.p Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
Potri.007G033000.5.p Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
Potri.007G045800.1.p Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
Potri.007G045800.2.p Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
Potri.007G057000.1.p Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
Potri.007G109900.1.p Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Potri.007G119300.1.p Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
Potri.007G119300.4.p Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
Potri.007G119300.5.p Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
Potri.007G147200.1.p Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Potri.008G047400.10.p Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
Potri.008G047400.11.p Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
Potri.008G047400.12.p Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
Potri.008G047400.5.p Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
Potri.008G047400.6.p Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
Potri.008G047400.7.p Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
Potri.008G047400.8.p Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
Potri.008G047400.9.p Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
Potri.008G090500.2.p Alkaloid NMT medium pass NMT__00068__sp_Q9XI84_RBCMT_ARATH