PlantSME Plant secondary metabolism enzyme database

Populus trichocarpa (populus_trichocarpa)

Imported from atlas release summary for Populus trichocarpa.

2612
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 743 19 BAHD (276) View species results
Alkaloid pathway 615 20 7DLGT (125) View species results
Phenylpropanoid pathway 524 11 POD (217) View species results
Flavonoid pathway 344 10 UFGT (232) View species results
Rosmarinic acid pathway 213 7 C4H (81) View species results
Steroid pathway 173 13 CAS (86) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2251 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 456 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
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Gene Pathway Family Confidence Status Best Target
Potri.004G023100.1.p Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Potri.004G023200.1.p Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Potri.004G052100.1.p Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Potri.004G134800.1.p Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Potri.004G144500.2.p Phenylpropanoid POD low borderline POD__00021__sp_Q9LEH3_PER15_IPOBA
Potri.004G144600.1.p Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Potri.004G160100.1.p Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Potri.004G174500.1.p Phenylpropanoid POD medium pass POD__00012__sp_Q10N21_APX1_ORYSJ
Potri.005G072800.1.p Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Potri.005G072800.2.p Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
Potri.005G089350.1.p Phenylpropanoid POD low borderline POD__00002__sp_A5H8G4_PER1_MAIZE
Potri.005G108900.1.p Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Potri.005G112200.1.p Phenylpropanoid POD medium pass POD__00012__sp_Q10N21_APX1_ORYSJ
Potri.005G118700.1.p Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Potri.005G135300.1.p Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Potri.005G179200.2.p Phenylpropanoid POD medium pass POD__00015__sp_Q69SV0_APX8_ORYSJ
Potri.005G195600.1.p Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Potri.005G195700.1.p Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Potri.005G233400.1.p Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Potri.006G025900.1.p Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Potri.006G025900.3.p Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Potri.006G063700.1.p Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Potri.006G063700.7.p Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Potri.006G069600.1.p Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Potri.006G089000.1.p Phenylpropanoid POD medium pass POD__00020__sp_Q9FE01_APX2_ORYSJ
Potri.006G089000.2.p Phenylpropanoid POD medium pass POD__00011__sp_Q05431_APX1_ARATH
Potri.006G089000.3.p Phenylpropanoid POD medium pass POD__00012__sp_Q10N21_APX1_ORYSJ
Potri.006G107000.1.p Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
Potri.006G118600.1.p Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Potri.006G118600.2.p Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Potri.006G118600.3.p Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Potri.006G129900.1.p Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Potri.006G132200.3.p Phenylpropanoid POD medium pass POD__00011__sp_Q05431_APX1_ARATH
Potri.006G137500.1.p Phenylpropanoid POD medium pass POD__00016__sp_Q6QPJ6_PRXQ_POPJC
Potri.006G204900.2.p Phenylpropanoid POD low borderline POD__00007__sp_P0C5C9_REHYA_ORYSJ
Potri.006G251700.2.p Phenylpropanoid POD medium pass POD__00018__sp_Q8H0V5_OCP3_ARATH
Potri.006G254500.1.p Phenylpropanoid POD medium pass POD__00012__sp_Q10N21_APX1_ORYSJ
Potri.006G265400.1.p Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Potri.006G267400.1.p Phenylpropanoid POD medium pass POD__00013__sp_Q4W1I8_PER1_ZINEL
Potri.007G019300.1.p Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Potri.007G053400.1.p Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Potri.007G067200.1.p Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Potri.007G067200.2.p Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Potri.007G074700.1.p Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Potri.007G096200.1.p Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Potri.007G122100.1.p Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Potri.007G122200.1.p Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Potri.007G122250.1.p Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Potri.007G122301.1.p Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Potri.007G122351.1.p Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC