PlantSME Plant secondary metabolism enzyme database

Populus trichocarpa (populus_trichocarpa)

Imported from atlas release summary for Populus trichocarpa.

3008
Candidate Protein Records
2612
Pathway-Level Records
6120
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 743 19 BAHD (276) View species results
Alkaloid pathway 615 20 7DLGT (125) View species results
Phenylpropanoid pathway 524 11 POD (217) View species results
Flavonoid pathway 344 10 UFGT (232) View species results
Rosmarinic acid pathway 213 7 C4H (81) View species results
Steroid pathway 173 13 CAS (86) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2251 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 456 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Potri.008G173100.3.p Alkaloid NMT medium pass NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Potri.008G222700.1.p Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Potri.008G222700.4.p Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Potri.008G222700.5.p Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Potri.009G006800.1.p Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
Potri.009G058600.1.p Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Potri.009G058600.2.p Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Potri.009G138600.2.p Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Potri.010G014600.3.p Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Potri.010G064300.2.p Alkaloid NMT medium pass NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Potri.010G064300.3.p Alkaloid NMT medium pass NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Potri.010G067567.1.p Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Potri.010G067567.2.p Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Potri.010G067633.1.p Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Potri.010G067700.2.p Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Potri.010G067800.1.p Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Potri.010G067800.2.p Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Potri.010G067900.1.p Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Potri.010G067900.2.p Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Potri.010G067900.3.p Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Potri.010G067900.4.p Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Potri.010G067900.5.p Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Potri.011G103100.1.p Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
Potri.011G157500.3.p Alkaloid NMT low borderline NMT__00059__sp_Q9M571_PEAMT_SPIOL
Potri.012G013900.2.p Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Potri.012G018300.1.p Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Potri.012G018300.2.p Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Potri.012G047301.1.p Alkaloid NMT medium pass NMT__00050__sp_Q944H0_PEAM2_ARATH
Potri.012G047301.2.p Alkaloid NMT medium pass NMT__00050__sp_Q944H0_PEAM2_ARATH
Potri.012G047400.2.p Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
Potri.012G115500.1.p Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Potri.012G115500.2.p Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Potri.012G115500.3.p Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Potri.012G115500.4.p Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Potri.012G115500.5.p Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Potri.012G115500.6.p Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Potri.013G017210.1.p Alkaloid NMT medium pass NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Potri.013G048100.7.p Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Potri.013G048100.8.p Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Potri.013G064600.1.p Alkaloid NMT low borderline NMT__00033__sp_Q5QD03_SUVH3_CHLRE
Potri.013G077000.1.p Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Potri.013G077000.3.p Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Potri.013G143600.1.p Alkaloid NMT medium pass NMT__00011__sp_A9X7L0_ANMT_RUTGR
Potri.014G004000.2.p Alkaloid NMT low borderline NMT__00060__sp_Q9MAT5_ANM10_ARATH
Potri.014G077700.2.p Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
Potri.014G098400.10.p Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Potri.014G098400.11.p Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Potri.014G098400.12.p Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Potri.014G098400.6.p Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Potri.014G098400.7.p Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ