PlantSME Plant secondary metabolism enzyme database

Populus trichocarpa (populus_trichocarpa)

Imported from atlas release summary for Populus trichocarpa.

3008
Candidate Protein Records
2612
Pathway-Level Records
6120
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 743 19 BAHD (276) View species results
Alkaloid pathway 615 20 7DLGT (125) View species results
Phenylpropanoid pathway 524 11 POD (217) View species results
Flavonoid pathway 344 10 UFGT (232) View species results
Rosmarinic acid pathway 213 7 C4H (81) View species results
Steroid pathway 173 13 CAS (86) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2251 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 456 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Potri.001G455400.1.p Flavonoid F3H medium pass
Potri.002G039500.2.p Flavonoid F3H medium pass
Potri.002G039500.3.p Flavonoid F3H medium borderline
Potri.002G039600.2.p Flavonoid F3H medium pass
Potri.002G040425.1.p Flavonoid F3H medium pass
Potri.002G040700.1.p Flavonoid F3H medium borderline
Potri.002G078600.1.p Flavonoid F3H medium borderline
Potri.002G086700.1.p Flavonoid F3H medium borderline
Potri.002G151300.1.p Flavonoid F3H medium borderline
Potri.002G159500.1.p Flavonoid F3H low borderline
Potri.002G224100.1.p Flavonoid F3H medium borderline
Potri.003G030400.1.p Flavonoid F3H medium borderline
Potri.003G030451.1.p Flavonoid F3H medium borderline
Potri.003G030500.1.p Flavonoid F3H medium borderline
Potri.003G057400.1.p Flavonoid F3H medium borderline
Potri.003G079600.1.p Flavonoid F3H low borderline
Potri.003G119100.1.p Flavonoid F3H medium borderline
Potri.003G128100.1.p Flavonoid F3H low borderline
Potri.004G003000.1.p Flavonoid F3H medium borderline
Potri.004G003000.3.p Flavonoid F3H medium borderline
Potri.004G022800.1.p Flavonoid F3H medium borderline
Potri.004G022800.3.p Flavonoid F3H medium borderline
Potri.004G022800.4.p Flavonoid F3H medium borderline
Potri.004G065000.1.p Flavonoid F3H medium borderline
Potri.004G139600.1.p Flavonoid F3H medium borderline
Potri.004G139700.1.p Flavonoid F3H medium borderline
Potri.004G146000.1.p Flavonoid F3H low borderline
Potri.004G146100.1.p Flavonoid F3H low borderline
Potri.005G013600.1.p Flavonoid F3H medium borderline
Potri.005G065400.1.p Flavonoid F3H medium borderline
Potri.005G097900.1.p Flavonoid F3H medium borderline
Potri.005G113700.1.p Flavonoid F3H medium borderline
Potri.005G113900.1.p Flavonoid F3H medium borderline
Potri.005G113900.2.p Flavonoid F3H medium borderline
Potri.005G182700.1.p Flavonoid F3H medium borderline
Potri.005G184200.1.p Flavonoid F3H medium borderline
Potri.005G184400.1.p Flavonoid F3H medium borderline
Potri.005G185000.1.p Flavonoid F3H medium pass
Potri.005G222300.1.p Flavonoid F3H medium borderline
Potri.005G223000.1.p Flavonoid F3H medium borderline
Potri.006G015400.2.p Flavonoid F3H low borderline
Potri.006G015400.3.p Flavonoid F3H low borderline
Potri.006G062500.1.p Flavonoid F3H medium borderline
Potri.006G101100.1.p Flavonoid F3H medium borderline
Potri.006G101200.1.p Flavonoid F3H medium borderline
Potri.006G151600.1.p Flavonoid F3H medium borderline
Potri.006G247700.1.p Flavonoid F3H low borderline
Potri.006G248000.1.p Flavonoid F3H low borderline
Potri.007G047100.6.p Flavonoid F3H low borderline
Potri.007G103800.1.p Flavonoid F3H medium borderline