PlantSME Plant secondary metabolism enzyme database

Porella caespitans var.nipponica (porella_caespitans_var_nipponica)

Imported from atlas release summary for Porella caespitans var.nipponica.

550
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 28.0% Terpenoid pathway 22.91% Alkaloid pathway 22.73% Rosmarinic acid pathway 10.55% Flavonoid pathway 9.45% Steroid pathway 6.36%
Family Distribution
C4H 6.75% BAHD 5.71% C3'H/CYP98A 5.0% POD 4.74% CYP76 4.68% 4CL 4.09% NMT 3.9% STR 3.44%
Other Families 61.69%
More Families (95)
IFS 47 3.05% F3H 45 2.92% GS 38 2.47% F3'H/CYP75B 36 2.34% UGT 34 2.21% H6H 30 1.95% IFR 30 1.95% BR6OX2/CYP85A2 30 1.95% T16H 28 1.82% T3O 27 1.75% DWF4/CYP90B1 27 1.75% TRI/TRII 26 1.69% COMT 25 1.62% CAD 25 1.62% RAS 23 1.49% 7DLGT 22 1.43% HCT 19 1.23% SMT1/SMT2/SMT3 19 1.23% G8O/G8H 17 1.1% CODM/T6ODM 16 1.04% IO 16 1.04% UFGT 16 1.04% F5H/CYP84A 15 0.97% BR6OX1/CYP85A1 15 0.97% TPS 14 0.91% COR 12 0.78% F3'5'H/CYP75A 12 0.78% CSE 11 0.71% SGD 10 0.65% 16OMT 10 0.65% FNS 10 0.65% CYP71 9 0.58% SLS 8 0.52% GES 8 0.52% LAC 8 0.52% CYP90D1 8 0.52% CAS 8 0.52% CPD/CYP90A1 8 0.52% ROT3/CYP90C1 8 0.52% CNMT 7 0.45% PYKS 7 0.45% 7DLH 7 0.45% 8HGO 7 0.45% PAL 6 0.39% GGPPS 6 0.39% NCS 5 0.32% CYP80B1 5 0.32% CYP719 5 0.32% PMT 5 0.32% ANR 5 0.32% CPR 5 0.32% SQS/FDFT1 5 0.32% MPO 4 0.26% ISY 4 0.26% DFR 4 0.26% CHI 4 0.26% CCR 4 0.26% CCoAOMT 4 0.26% HPPR 4 0.26% TAT 4 0.26% DET2 4 0.26% AACT 4 0.26% MCT/IspD 4 0.26% DXS 4 0.26% TDC 3 0.19% LAMT 3 0.19% ADC 3 0.19% ANS/LDOX 3 0.19% CHS 3 0.19% CYP51G1 3 0.19% FPPS 3 0.19% MVD 3 0.19% XMT_MXMT_DXMT 2 0.13% BBE 2 0.13% 6OMT_4OMT_SOMT 2 0.13% FLS 2 0.13% DWF5 2 0.13% SMO1/SMO2 2 0.13% CPI1 2 0.13% DWF1 2 0.13% MDS/IspF 2 0.13% MVK 2 0.13% CYP80F1 1 0.06% ODC 1 0.06% FK 1 0.06% DWF7 1 0.06% HYD1 1 0.06% SQE 1 0.06% DXR 1 0.06% PMK 1 0.06% CMK/IspE 1 0.06% IDI 1 0.06% HMGS 1 0.06% HDR/IspH 1 0.06% HDS/IspG 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 154 10 POD (70) View species results
Terpenoid pathway 126 18 BAHD (51) View species results
Alkaloid pathway 125 18 NMT (25) View species results
Rosmarinic acid pathway 58 7 C4H (27) View species results
Flavonoid pathway 52 8 UFGT (13) View species results
Steroid pathway 35 15 SMT1/SMT2/SMT3 (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 585 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 130 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Gene Pathway Family Confidence Status
Pcae1207780005530 Flavonoid IFS low borderline
Pcae1272940009810 Flavonoid IFS low borderline
Pcae1405690019690 Flavonoid IFS low borderline
Pcae1438790020960 Flavonoid IFS medium borderline
Pcae1543340027460 Flavonoid IFS medium borderline
Pcae1588310030310 Flavonoid IFS low borderline
Pcae1612860034100 Flavonoid IFS medium borderline
Pcae1658150040290 Flavonoid IFS medium borderline
Pcae1861210055180 Flavonoid IFS low borderline
Pcae1870970056820 Flavonoid IFS low borderline
Pcae1896200064630 Flavonoid IFS medium borderline
Pcae1896430064690 Flavonoid IFS medium borderline
Pcae1899830066490 Flavonoid IFS medium borderline
Pcae1919290070120 Flavonoid IFS medium borderline
Pcae1944380073470 Flavonoid IFS low borderline
Pcae2111600097900 Flavonoid IFS low borderline
Pcae2123280103410 Flavonoid IFS medium borderline
Pcae2125280104970 Flavonoid IFS low borderline
Pcae2216260109310 Flavonoid IFS medium borderline
Pcae2221350109820 Flavonoid IFS low borderline
Pcae2340990126710 Flavonoid IFS medium borderline
Pcae2370570132890 Flavonoid IFS low borderline
Pcae2382270140470 Flavonoid IFS low borderline
Pcae2382500140710 Flavonoid IFS medium borderline
Pcae2426230154690 Flavonoid IFS medium borderline
Pcae2442320163100 Flavonoid IFS medium borderline
Pcae2442320163120 Flavonoid IFS medium borderline
Pcae2444320164550 Flavonoid IFS low borderline
Pcae2444550164790 Flavonoid IFS low borderline
Pcae2445690166090 Flavonoid IFS medium borderline
Pcae2445770166350 Flavonoid IFS low borderline
Pcae2447950168750 Flavonoid IFS low borderline
Pcae2460570174410 Flavonoid IFS low borderline
Pcae2467650180820 Flavonoid IFS medium borderline
Pcae2468880182820 Flavonoid IFS medium borderline
Pcae2472050184990 Flavonoid IFS medium borderline
Pcae2472910185640 Flavonoid IFS low borderline
Pcae2475360188210 Flavonoid IFS medium borderline
Pcae2478630192160 Flavonoid IFS low borderline
Pcae2479310193620 Flavonoid IFS low borderline
Pcae2486890204950 Flavonoid IFS medium borderline
Pcae2489140209440 Flavonoid IFS medium borderline
Pcae2490670212250 Flavonoid IFS low borderline
Pcae2497100225650 Flavonoid IFS low borderline
Pcae2499510227820 Flavonoid IFS medium borderline
Pcae2580030228730 Flavonoid IFS low borderline
Pcae67280228920 Flavonoid IFS low borderline