Porella caespitans var.nipponica (porella_caespitans_var_nipponica)
Imported from atlas release summary for Porella caespitans var.nipponica.
550
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
550
Candidate Genes
C4H
6.75%
BAHD
5.71%
C3'H/CYP98A
5.0%
POD
4.74%
CYP76
4.68%
4CL
4.09%
NMT
3.9%
STR
3.44%
Other Families
61.69%
More Families (95)
IFS
47
3.05%
F3H
45
2.92%
GS
38
2.47%
F3'H/CYP75B
36
2.34%
UGT
34
2.21%
H6H
30
1.95%
IFR
30
1.95%
BR6OX2/CYP85A2
30
1.95%
T16H
28
1.82%
T3O
27
1.75%
DWF4/CYP90B1
27
1.75%
TRI/TRII
26
1.69%
COMT
25
1.62%
CAD
25
1.62%
RAS
23
1.49%
7DLGT
22
1.43%
HCT
19
1.23%
SMT1/SMT2/SMT3
19
1.23%
G8O/G8H
17
1.1%
CODM/T6ODM
16
1.04%
IO
16
1.04%
UFGT
16
1.04%
F5H/CYP84A
15
0.97%
BR6OX1/CYP85A1
15
0.97%
TPS
14
0.91%
COR
12
0.78%
F3'5'H/CYP75A
12
0.78%
CSE
11
0.71%
SGD
10
0.65%
16OMT
10
0.65%
FNS
10
0.65%
CYP71
9
0.58%
SLS
8
0.52%
GES
8
0.52%
LAC
8
0.52%
CYP90D1
8
0.52%
CAS
8
0.52%
CPD/CYP90A1
8
0.52%
ROT3/CYP90C1
8
0.52%
CNMT
7
0.45%
PYKS
7
0.45%
7DLH
7
0.45%
8HGO
7
0.45%
PAL
6
0.39%
GGPPS
6
0.39%
NCS
5
0.32%
CYP80B1
5
0.32%
CYP719
5
0.32%
PMT
5
0.32%
ANR
5
0.32%
CPR
5
0.32%
SQS/FDFT1
5
0.32%
MPO
4
0.26%
ISY
4
0.26%
DFR
4
0.26%
CHI
4
0.26%
CCR
4
0.26%
CCoAOMT
4
0.26%
HPPR
4
0.26%
TAT
4
0.26%
DET2
4
0.26%
AACT
4
0.26%
MCT/IspD
4
0.26%
DXS
4
0.26%
TDC
3
0.19%
LAMT
3
0.19%
ADC
3
0.19%
ANS/LDOX
3
0.19%
CHS
3
0.19%
CYP51G1
3
0.19%
FPPS
3
0.19%
MVD
3
0.19%
XMT_MXMT_DXMT
2
0.13%
BBE
2
0.13%
6OMT_4OMT_SOMT
2
0.13%
FLS
2
0.13%
DWF5
2
0.13%
SMO1/SMO2
2
0.13%
CPI1
2
0.13%
DWF1
2
0.13%
MDS/IspF
2
0.13%
MVK
2
0.13%
CYP80F1
1
0.06%
ODC
1
0.06%
FK
1
0.06%
DWF7
1
0.06%
HYD1
1
0.06%
SQE
1
0.06%
DXR
1
0.06%
PMK
1
0.06%
CMK/IspE
1
0.06%
IDI
1
0.06%
HMGS
1
0.06%
HDR/IspH
1
0.06%
HDS/IspG
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 154 | 10 | POD (70) | View species results |
| Terpenoid pathway | 126 | 18 | BAHD (51) | View species results |
| Alkaloid pathway | 125 | 18 | NMT (25) | View species results |
| Rosmarinic acid pathway | 58 | 7 | C4H (27) | View species results |
| Flavonoid pathway | 52 | 8 | UFGT (13) | View species results |
| Steroid pathway | 35 | 15 | SMT1/SMT2/SMT3 (11) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 585 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 130 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Pcae1265150008540 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Pcae1282740011100 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Pcae1294210012160 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Pcae1365980017680 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Pcae1504520023390 | Alkaloid | NMT | low | borderline | NMT__00052__sp_Q9AVJ9_MXMT1_COFAR |
| Pcae1587930030260 | Alkaloid | NMT | medium | borderline | NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB |
| Pcae1595220031480 | Alkaloid | NMT | medium | pass | NMT__00023__sp_O82210_ANM12_ARATH |
| Pcae1613140034140 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Pcae1637830037400 | Alkaloid | NMT | medium | pass | NMT__00062__sp_Q9SCP7_NAMT1_ARATH |
| Pcae1645160038510 | Alkaloid | NMT | medium | pass | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Pcae1646550038670 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Pcae1728330048900 | Alkaloid | NMT | medium | borderline | NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB |
| Pcae1778710051000 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Pcae1885780059640 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Pcae1927280070910 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| Pcae1936760072460 | Alkaloid | NMT | medium | borderline | NMT__00018__sp_I1M2U5_NAMT1_SOYBN |
| Pcae1966960075960 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Pcae1968460076250 | Alkaloid | NMT | medium | borderline | NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB |
| Pcae1995130078790 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Pcae2036580079890 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Pcae2047940080780 | Alkaloid | NMT | medium | borderline | NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB |
| Pcae2065410086410 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Pcae2107190096280 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Pcae2118210098640 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| Pcae2255340114740 | Alkaloid | NMT | low | borderline | NMT__00062__sp_Q9SCP7_NAMT1_ARATH |
| Pcae2371890133710 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Pcae2379710139250 | Alkaloid | NMT | medium | pass | NMT__00051__sp_Q96565_AMNMT_HORVV |
| Pcae2381910140260 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Pcae2383020141320 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Pcae2384360142890 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| Pcae2430840156920 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Pcae2437370159000 | Alkaloid | NMT | low | borderline | NMT__00020__sp_O23372_ATXR3_ARATH |
| Pcae2441550162470 | Alkaloid | NMT | medium | borderline | NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB |
| Pcae2445300165740 | Alkaloid | NMT | low | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Pcae2446420167270 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Pcae2459670173810 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| Pcae2465290177850 | Alkaloid | NMT | medium | pass | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Pcae2465710178180 | Alkaloid | NMT | medium | pass | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Pcae2469270183580 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Pcae2469860184440 | Alkaloid | NMT | medium | pass | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Pcae2476290188990 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Pcae2478690192290 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Pcae2481340195850 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| Pcae2482170196930 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| Pcae2483160198090 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Pcae2486460204000 | Alkaloid | NMT | medium | pass | NMT__00019__sp_O22781_SUVH2_ARATH |
| Pcae2487640206500 | Alkaloid | NMT | low | borderline | NMT__00021__sp_O64827_SUVR5_ARATH |
| Pcae2487990206960 | Alkaloid | NMT | low | borderline | NMT__00019__sp_O22781_SUVH2_ARATH |
| Pcae2487990206990 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Pcae2489050209250 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |