PlantSME Plant secondary metabolism enzyme database

Porella caespitans var.nipponica (porella_caespitans_var_nipponica)

Imported from atlas release summary for Porella caespitans var.nipponica.

550
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 28.0% Terpenoid pathway 22.91% Alkaloid pathway 22.73% Rosmarinic acid pathway 10.55% Flavonoid pathway 9.45% Steroid pathway 6.36%
Family Distribution
C4H 6.75% BAHD 5.71% C3'H/CYP98A 5.0% POD 4.74% CYP76 4.68% 4CL 4.09% NMT 3.9% STR 3.44%
Other Families 61.69%
More Families (95)
IFS 47 3.05% F3H 45 2.92% GS 38 2.47% F3'H/CYP75B 36 2.34% UGT 34 2.21% H6H 30 1.95% IFR 30 1.95% BR6OX2/CYP85A2 30 1.95% T16H 28 1.82% T3O 27 1.75% DWF4/CYP90B1 27 1.75% TRI/TRII 26 1.69% COMT 25 1.62% CAD 25 1.62% RAS 23 1.49% 7DLGT 22 1.43% HCT 19 1.23% SMT1/SMT2/SMT3 19 1.23% G8O/G8H 17 1.1% CODM/T6ODM 16 1.04% IO 16 1.04% UFGT 16 1.04% F5H/CYP84A 15 0.97% BR6OX1/CYP85A1 15 0.97% TPS 14 0.91% COR 12 0.78% F3'5'H/CYP75A 12 0.78% CSE 11 0.71% SGD 10 0.65% 16OMT 10 0.65% FNS 10 0.65% CYP71 9 0.58% SLS 8 0.52% GES 8 0.52% LAC 8 0.52% CYP90D1 8 0.52% CAS 8 0.52% CPD/CYP90A1 8 0.52% ROT3/CYP90C1 8 0.52% CNMT 7 0.45% PYKS 7 0.45% 7DLH 7 0.45% 8HGO 7 0.45% PAL 6 0.39% GGPPS 6 0.39% NCS 5 0.32% CYP80B1 5 0.32% CYP719 5 0.32% PMT 5 0.32% ANR 5 0.32% CPR 5 0.32% SQS/FDFT1 5 0.32% MPO 4 0.26% ISY 4 0.26% DFR 4 0.26% CHI 4 0.26% CCR 4 0.26% CCoAOMT 4 0.26% HPPR 4 0.26% TAT 4 0.26% DET2 4 0.26% AACT 4 0.26% MCT/IspD 4 0.26% DXS 4 0.26% TDC 3 0.19% LAMT 3 0.19% ADC 3 0.19% ANS/LDOX 3 0.19% CHS 3 0.19% CYP51G1 3 0.19% FPPS 3 0.19% MVD 3 0.19% XMT_MXMT_DXMT 2 0.13% BBE 2 0.13% 6OMT_4OMT_SOMT 2 0.13% FLS 2 0.13% DWF5 2 0.13% SMO1/SMO2 2 0.13% CPI1 2 0.13% DWF1 2 0.13% MDS/IspF 2 0.13% MVK 2 0.13% CYP80F1 1 0.06% ODC 1 0.06% FK 1 0.06% DWF7 1 0.06% HYD1 1 0.06% SQE 1 0.06% DXR 1 0.06% PMK 1 0.06% CMK/IspE 1 0.06% IDI 1 0.06% HMGS 1 0.06% HDR/IspH 1 0.06% HDS/IspG 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 154 10 POD (70) View species results
Terpenoid pathway 126 18 BAHD (51) View species results
Alkaloid pathway 125 18 NMT (25) View species results
Rosmarinic acid pathway 58 7 C4H (27) View species results
Flavonoid pathway 52 8 UFGT (13) View species results
Steroid pathway 35 15 SMT1/SMT2/SMT3 (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 585 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 130 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Pcae1405690019690 Alkaloid T3O medium pass
Pcae1588310030310 Alkaloid T3O high pass
Pcae1692090044840 Alkaloid T3O low borderline
Pcae1861210055180 Alkaloid T3O low borderline
Pcae1964950075530 Alkaloid T3O medium pass
Pcae2060090084220 Alkaloid T3O medium borderline
Pcae2070570088230 Alkaloid T3O medium borderline
Pcae2082630093780 Alkaloid T3O medium pass
Pcae2111600097900 Alkaloid T3O medium pass
Pcae2123280103410 Alkaloid T3O medium borderline
Pcae2216260109310 Alkaloid T3O medium borderline
Pcae2224720110210 Alkaloid T3O low borderline
Pcae2239910112230 Alkaloid T3O medium borderline
Pcae2372850134310 Alkaloid T3O low borderline
Pcae2381440139980 Alkaloid T3O medium pass
Pcae2445770166350 Alkaloid T3O medium pass
Pcae2447950168750 Alkaloid T3O medium pass
Pcae2448270168830 Alkaloid T3O medium pass
Pcae2467650180820 Alkaloid T3O medium borderline
Pcae2472050184990 Alkaloid T3O medium borderline
Pcae2472910185640 Alkaloid T3O medium pass
Pcae2478630192160 Alkaloid T3O medium pass
Pcae2479310193620 Alkaloid T3O medium pass
Pcae2486890204950 Alkaloid T3O medium borderline
Pcae2497100225650 Alkaloid T3O medium pass
Pcae2499510227820 Alkaloid T3O medium borderline
Pcae2580030228730 Alkaloid T3O low borderline