Porella caespitans var.nipponica (porella_caespitans_var_nipponica)
Imported from atlas release summary for Porella caespitans var.nipponica.
829
Candidate Protein Records
550
Pathway-Level Records
1540
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
1540
Family-Level Calls
C4H
6.75%
BAHD
5.71%
C3'H/CYP98A
5.0%
POD
4.74%
CYP76
4.68%
4CL
4.09%
NMT
3.9%
STR
3.44%
Other Families
61.69%
More Families (95)
IFS
47
3.05%
F3H
45
2.92%
GS
38
2.47%
F3'H/CYP75B
36
2.34%
UGT
34
2.21%
H6H
30
1.95%
IFR
30
1.95%
BR6OX2/CYP85A2
30
1.95%
T16H
28
1.82%
T3O
27
1.75%
DWF4/CYP90B1
27
1.75%
TRI/TRII
26
1.69%
COMT
25
1.62%
CAD
25
1.62%
RAS
23
1.49%
7DLGT
22
1.43%
HCT
19
1.23%
SMT1/SMT2/SMT3
19
1.23%
G8O/G8H
17
1.1%
CODM/T6ODM
16
1.04%
IO
16
1.04%
UFGT
16
1.04%
F5H/CYP84A
15
0.97%
BR6OX1/CYP85A1
15
0.97%
TPS
14
0.91%
COR
12
0.78%
F3'5'H/CYP75A
12
0.78%
CSE
11
0.71%
SGD
10
0.65%
16OMT
10
0.65%
FNS
10
0.65%
CYP71
9
0.58%
SLS
8
0.52%
GES
8
0.52%
LAC
8
0.52%
CYP90D1
8
0.52%
CAS
8
0.52%
CPD/CYP90A1
8
0.52%
ROT3/CYP90C1
8
0.52%
CNMT
7
0.45%
PYKS
7
0.45%
7DLH
7
0.45%
8HGO
7
0.45%
PAL
6
0.39%
GGPPS
6
0.39%
NCS
5
0.32%
CYP80B1
5
0.32%
CYP719
5
0.32%
PMT
5
0.32%
ANR
5
0.32%
CPR
5
0.32%
SQS/FDFT1
5
0.32%
MPO
4
0.26%
ISY
4
0.26%
DFR
4
0.26%
CHI
4
0.26%
CCR
4
0.26%
CCoAOMT
4
0.26%
HPPR
4
0.26%
TAT
4
0.26%
DET2
4
0.26%
AACT
4
0.26%
MCT/IspD
4
0.26%
DXS
4
0.26%
TDC
3
0.19%
LAMT
3
0.19%
ADC
3
0.19%
ANS/LDOX
3
0.19%
CHS
3
0.19%
CYP51G1
3
0.19%
FPPS
3
0.19%
MVD
3
0.19%
XMT_MXMT_DXMT
2
0.13%
BBE
2
0.13%
6OMT_4OMT_SOMT
2
0.13%
FLS
2
0.13%
DWF5
2
0.13%
SMO1/SMO2
2
0.13%
CPI1
2
0.13%
DWF1
2
0.13%
MDS/IspF
2
0.13%
MVK
2
0.13%
CYP80F1
1
0.06%
ODC
1
0.06%
FK
1
0.06%
DWF7
1
0.06%
HYD1
1
0.06%
SQE
1
0.06%
DXR
1
0.06%
PMK
1
0.06%
CMK/IspE
1
0.06%
IDI
1
0.06%
HMGS
1
0.06%
HDR/IspH
1
0.06%
HDS/IspG
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 154 | 10 | POD (70) | View species results |
| Terpenoid pathway | 126 | 18 | BAHD (51) | View species results |
| Alkaloid pathway | 125 | 18 | NMT (25) | View species results |
| Rosmarinic acid pathway | 58 | 7 | C4H (27) | View species results |
| Flavonoid pathway | 52 | 8 | UFGT (13) | View species results |
| Steroid pathway | 35 | 15 | SMT1/SMT2/SMT3 (11) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 585 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 130 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Pcae2481180195530 | Alkaloid | TRI/TRII | low | borderline |
| Pcae2483710199130 | Alkaloid | TRI/TRII | medium | pass |
| Pcae1610830033830 | Alkaloid | XMT_MXMT_DXMT | medium | borderline |
| Pcae1893300063110 | Alkaloid | XMT_MXMT_DXMT | medium | borderline |
| Pcae1094750001110 | Flavonoid | 4CL | medium | pass |
| Pcae116290004560 | Flavonoid | 4CL | medium | pass |
| Pcae1251740006530 | Flavonoid | 4CL | low | borderline |
| Pcae1579460029300 | Flavonoid | 4CL | low | borderline |
| Pcae1617630034910 | Flavonoid | 4CL | medium | pass |
| Pcae1635670037130 | Flavonoid | 4CL | low | borderline |
| Pcae1695540045390 | Flavonoid | 4CL | medium | pass |
| Pcae1868800056450 | Flavonoid | 4CL | medium | pass |
| Pcae1897120064940 | Flavonoid | 4CL | low | borderline |
| Pcae2015650078980 | Flavonoid | 4CL | low | borderline |
| Pcae2049990081180 | Flavonoid | 4CL | medium | pass |
| Pcae2080310092230 | Flavonoid | 4CL | low | borderline |
| Pcae2081800093210 | Flavonoid | 4CL | medium | pass |
| Pcae2132930105870 | Flavonoid | 4CL | low | borderline |
| Pcae2376230136890 | Flavonoid | 4CL | medium | pass |
| Pcae2379620139220 | Flavonoid | 4CL | medium | pass |
| Pcae2447950168710 | Flavonoid | 4CL | medium | pass |
| Pcae2447950168720 | Flavonoid | 4CL | medium | pass |
| Pcae2454470170250 | Flavonoid | 4CL | low | borderline |
| Pcae2464810177370 | Flavonoid | 4CL | medium | pass |
| Pcae2492570216030 | Flavonoid | 4CL | low | borderline |
| Pcae1646090038590 | Flavonoid | ANR | low | borderline |
| Pcae2148250107420 | Flavonoid | ANR | medium | borderline |
| Pcae2385430144440 | Flavonoid | ANR | medium | borderline |
| Pcae2421110152460 | Flavonoid | ANR | medium | borderline |
| Pcae2459540173650 | Flavonoid | ANR | medium | borderline |
| Pcae1578600029240 | Flavonoid | ANS/LDOX | medium | borderline |
| Pcae2108320097320 | Flavonoid | ANS/LDOX | medium | borderline |
| Pcae2378330138190 | Flavonoid | ANS/LDOX | medium | borderline |
| Pcae1262010008020 | Flavonoid | C4H | low | borderline |
| Pcae1543340027450 | Flavonoid | C4H | low | borderline |
| Pcae1619560035160 | Flavonoid | C4H | low | borderline |
| Pcae1660550040600 | Flavonoid | C4H | low | borderline |
| Pcae1894000063510 | Flavonoid | C4H | low | borderline |
| Pcae2072430088670 | Flavonoid | C4H | medium | borderline |
| Pcae2081030092760 | Flavonoid | C4H | medium | borderline |
| Pcae2461090174760 | Flavonoid | C4H | low | borderline |
| Pcae1732170049150 | Flavonoid | CHI | medium | pass |
| Pcae2217090109400 | Flavonoid | CHI | medium | pass |
| Pcae2268870117340 | Flavonoid | CHI | medium | pass |
| Pcae2435250157740 | Flavonoid | CHI | low | borderline |
| Pcae2382880141200 | Flavonoid | CHS | low | borderline |
| Pcae2477730191150 | Flavonoid | CHS | medium | pass |
| Pcae2485630202790 | Flavonoid | CHS | medium | pass |
| Pcae1611780033910 | Flavonoid | DFR | medium | borderline |
| Pcae2108780097460 | Flavonoid | DFR | low | borderline |