Porella caespitans var.nipponica (porella_caespitans_var_nipponica)
Imported from atlas release summary for Porella caespitans var.nipponica.
550
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
550
Candidate Genes
C4H
6.75%
BAHD
5.71%
C3'H/CYP98A
5.0%
POD
4.74%
CYP76
4.68%
4CL
4.09%
NMT
3.9%
STR
3.44%
Other Families
61.69%
More Families (95)
IFS
47
3.05%
F3H
45
2.92%
GS
38
2.47%
F3'H/CYP75B
36
2.34%
UGT
34
2.21%
H6H
30
1.95%
IFR
30
1.95%
BR6OX2/CYP85A2
30
1.95%
T16H
28
1.82%
T3O
27
1.75%
DWF4/CYP90B1
27
1.75%
TRI/TRII
26
1.69%
COMT
25
1.62%
CAD
25
1.62%
RAS
23
1.49%
7DLGT
22
1.43%
HCT
19
1.23%
SMT1/SMT2/SMT3
19
1.23%
G8O/G8H
17
1.1%
CODM/T6ODM
16
1.04%
IO
16
1.04%
UFGT
16
1.04%
F5H/CYP84A
15
0.97%
BR6OX1/CYP85A1
15
0.97%
TPS
14
0.91%
COR
12
0.78%
F3'5'H/CYP75A
12
0.78%
CSE
11
0.71%
SGD
10
0.65%
16OMT
10
0.65%
FNS
10
0.65%
CYP71
9
0.58%
SLS
8
0.52%
GES
8
0.52%
LAC
8
0.52%
CYP90D1
8
0.52%
CAS
8
0.52%
CPD/CYP90A1
8
0.52%
ROT3/CYP90C1
8
0.52%
CNMT
7
0.45%
PYKS
7
0.45%
7DLH
7
0.45%
8HGO
7
0.45%
PAL
6
0.39%
GGPPS
6
0.39%
NCS
5
0.32%
CYP80B1
5
0.32%
CYP719
5
0.32%
PMT
5
0.32%
ANR
5
0.32%
CPR
5
0.32%
SQS/FDFT1
5
0.32%
MPO
4
0.26%
ISY
4
0.26%
DFR
4
0.26%
CHI
4
0.26%
CCR
4
0.26%
CCoAOMT
4
0.26%
HPPR
4
0.26%
TAT
4
0.26%
DET2
4
0.26%
AACT
4
0.26%
MCT/IspD
4
0.26%
DXS
4
0.26%
TDC
3
0.19%
LAMT
3
0.19%
ADC
3
0.19%
ANS/LDOX
3
0.19%
CHS
3
0.19%
CYP51G1
3
0.19%
FPPS
3
0.19%
MVD
3
0.19%
XMT_MXMT_DXMT
2
0.13%
BBE
2
0.13%
6OMT_4OMT_SOMT
2
0.13%
FLS
2
0.13%
DWF5
2
0.13%
SMO1/SMO2
2
0.13%
CPI1
2
0.13%
DWF1
2
0.13%
MDS/IspF
2
0.13%
MVK
2
0.13%
CYP80F1
1
0.06%
ODC
1
0.06%
FK
1
0.06%
DWF7
1
0.06%
HYD1
1
0.06%
SQE
1
0.06%
DXR
1
0.06%
PMK
1
0.06%
CMK/IspE
1
0.06%
IDI
1
0.06%
HMGS
1
0.06%
HDR/IspH
1
0.06%
HDS/IspG
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 154 | 10 | POD (70) | View species results |
| Terpenoid pathway | 126 | 18 | BAHD (51) | View species results |
| Alkaloid pathway | 125 | 18 | NMT (25) | View species results |
| Rosmarinic acid pathway | 58 | 7 | C4H (27) | View species results |
| Flavonoid pathway | 52 | 8 | UFGT (13) | View species results |
| Steroid pathway | 35 | 15 | SMT1/SMT2/SMT3 (11) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 585 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 130 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Pcae2489140209440 | Rosmarinic Acid | C4H | low | borderline |
| Pcae2490670212250 | Rosmarinic Acid | C4H | low | borderline |
| Pcae2497870226440 | Rosmarinic Acid | C4H | low | borderline |
| Pcae2499510227820 | Rosmarinic Acid | C4H | medium | pass |
| Pcae1125810002930 | Rosmarinic Acid | CPR | medium | pass |
| Pcae1891040062110 | Rosmarinic Acid | CPR | medium | pass |
| Pcae1907700069170 | Rosmarinic Acid | CPR | medium | pass |
| Pcae2376740137430 | Rosmarinic Acid | CPR | medium | pass |
| Pcae2378630138360 | Rosmarinic Acid | CPR | low | borderline |
| Pcae1652090039390 | Rosmarinic Acid | HPPR | medium | pass |
| Pcae1699580045990 | Rosmarinic Acid | HPPR | medium | pass |
| Pcae1699580046000 | Rosmarinic Acid | HPPR | medium | pass |
| Pcae2379800139270 | Rosmarinic Acid | HPPR | medium | pass |
| Pcae2466440179480 | Rosmarinic Acid | PAL | medium | pass |
| Pcae2474760187600 | Rosmarinic Acid | PAL | low | borderline |
| Pcae1141960003650 | Rosmarinic Acid | RAS | medium | pass |
| Pcae1251980006580 | Rosmarinic Acid | RAS | low | borderline |
| Pcae1282270011050 | Rosmarinic Acid | RAS | low | borderline |
| Pcae1599110032060 | Rosmarinic Acid | RAS | medium | borderline |
| Pcae1605520032950 | Rosmarinic Acid | RAS | low | borderline |
| Pcae1619620035170 | Rosmarinic Acid | RAS | medium | pass |
| Pcae1634670037000 | Rosmarinic Acid | RAS | low | borderline |
| Pcae1666200041480 | Rosmarinic Acid | RAS | medium | pass |
| Pcae1781210051130 | Rosmarinic Acid | RAS | low | borderline |
| Pcae1811640052060 | Rosmarinic Acid | RAS | medium | pass |
| Pcae1871160056870 | Rosmarinic Acid | RAS | low | borderline |
| Pcae2064410085980 | Rosmarinic Acid | RAS | medium | pass |
| Pcae2227000110460 | Rosmarinic Acid | RAS | medium | pass |
| Pcae2376490137160 | Rosmarinic Acid | RAS | low | borderline |
| Pcae2378680138410 | Rosmarinic Acid | RAS | low | borderline |
| Pcae2385210144120 | Rosmarinic Acid | RAS | low | borderline |
| Pcae2419420151910 | Rosmarinic Acid | RAS | low | borderline |
| Pcae2441560162480 | Rosmarinic Acid | RAS | medium | pass |
| Pcae2479730194510 | Rosmarinic Acid | RAS | low | borderline |
| Pcae2483170198170 | Rosmarinic Acid | RAS | medium | pass |
| Pcae2484700200910 | Rosmarinic Acid | RAS | low | borderline |
| Pcae2484700200960 | Rosmarinic Acid | RAS | low | borderline |
| Pcae2489880210460 | Rosmarinic Acid | RAS | low | borderline |
| Pcae2055060082930 | Rosmarinic Acid | TAT | low | borderline |
| Pcae2061030084790 | Rosmarinic Acid | TAT | low | borderline |
| Pcae2463850176220 | Rosmarinic Acid | TAT | medium | pass |
| Pcae2479080193230 | Rosmarinic Acid | TAT | medium | pass |