Porella caespitans var.nipponica (porella_caespitans_var_nipponica)
Imported from atlas release summary for Porella caespitans var.nipponica.
550
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
550
Candidate Genes
C4H
6.75%
BAHD
5.71%
C3'H/CYP98A
5.0%
POD
4.74%
CYP76
4.68%
4CL
4.09%
NMT
3.9%
STR
3.44%
Other Families
61.69%
More Families (95)
IFS
47
3.05%
F3H
45
2.92%
GS
38
2.47%
F3'H/CYP75B
36
2.34%
UGT
34
2.21%
H6H
30
1.95%
IFR
30
1.95%
BR6OX2/CYP85A2
30
1.95%
T16H
28
1.82%
T3O
27
1.75%
DWF4/CYP90B1
27
1.75%
TRI/TRII
26
1.69%
COMT
25
1.62%
CAD
25
1.62%
RAS
23
1.49%
7DLGT
22
1.43%
HCT
19
1.23%
SMT1/SMT2/SMT3
19
1.23%
G8O/G8H
17
1.1%
CODM/T6ODM
16
1.04%
IO
16
1.04%
UFGT
16
1.04%
F5H/CYP84A
15
0.97%
BR6OX1/CYP85A1
15
0.97%
TPS
14
0.91%
COR
12
0.78%
F3'5'H/CYP75A
12
0.78%
CSE
11
0.71%
SGD
10
0.65%
16OMT
10
0.65%
FNS
10
0.65%
CYP71
9
0.58%
SLS
8
0.52%
GES
8
0.52%
LAC
8
0.52%
CYP90D1
8
0.52%
CAS
8
0.52%
CPD/CYP90A1
8
0.52%
ROT3/CYP90C1
8
0.52%
CNMT
7
0.45%
PYKS
7
0.45%
7DLH
7
0.45%
8HGO
7
0.45%
PAL
6
0.39%
GGPPS
6
0.39%
NCS
5
0.32%
CYP80B1
5
0.32%
CYP719
5
0.32%
PMT
5
0.32%
ANR
5
0.32%
CPR
5
0.32%
SQS/FDFT1
5
0.32%
MPO
4
0.26%
ISY
4
0.26%
DFR
4
0.26%
CHI
4
0.26%
CCR
4
0.26%
CCoAOMT
4
0.26%
HPPR
4
0.26%
TAT
4
0.26%
DET2
4
0.26%
AACT
4
0.26%
MCT/IspD
4
0.26%
DXS
4
0.26%
TDC
3
0.19%
LAMT
3
0.19%
ADC
3
0.19%
ANS/LDOX
3
0.19%
CHS
3
0.19%
CYP51G1
3
0.19%
FPPS
3
0.19%
MVD
3
0.19%
XMT_MXMT_DXMT
2
0.13%
BBE
2
0.13%
6OMT_4OMT_SOMT
2
0.13%
FLS
2
0.13%
DWF5
2
0.13%
SMO1/SMO2
2
0.13%
CPI1
2
0.13%
DWF1
2
0.13%
MDS/IspF
2
0.13%
MVK
2
0.13%
CYP80F1
1
0.06%
ODC
1
0.06%
FK
1
0.06%
DWF7
1
0.06%
HYD1
1
0.06%
SQE
1
0.06%
DXR
1
0.06%
PMK
1
0.06%
CMK/IspE
1
0.06%
IDI
1
0.06%
HMGS
1
0.06%
HDR/IspH
1
0.06%
HDS/IspG
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 154 | 10 | POD (70) | View species results |
| Terpenoid pathway | 126 | 18 | BAHD (51) | View species results |
| Alkaloid pathway | 125 | 18 | NMT (25) | View species results |
| Rosmarinic acid pathway | 58 | 7 | C4H (27) | View species results |
| Flavonoid pathway | 52 | 8 | UFGT (13) | View species results |
| Steroid pathway | 35 | 15 | SMT1/SMT2/SMT3 (11) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 585 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 130 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Pcae2426230154690 | Terpenoid | CYP76 | medium | borderline |
| Pcae2435500157880 | Terpenoid | CYP76 | medium | pass |
| Pcae2442320163100 | Terpenoid | CYP76 | medium | borderline |
| Pcae2442320163110 | Terpenoid | CYP76 | low | borderline |
| Pcae2442320163120 | Terpenoid | CYP76 | medium | borderline |
| Pcae2444550164790 | Terpenoid | CYP76 | low | borderline |
| Pcae2445690166090 | Terpenoid | CYP76 | medium | borderline |
| Pcae2446260167060 | Terpenoid | CYP76 | medium | pass |
| Pcae2461680175220 | Terpenoid | CYP76 | medium | pass |
| Pcae2467650180820 | Terpenoid | CYP76 | medium | borderline |
| Pcae2467800180960 | Terpenoid | CYP76 | low | borderline |
| Pcae2468880182820 | Terpenoid | CYP76 | medium | borderline |
| Pcae2472050184990 | Terpenoid | CYP76 | medium | borderline |
| Pcae2475360188210 | Terpenoid | CYP76 | medium | borderline |
| Pcae2478720192340 | Terpenoid | CYP76 | medium | pass |
| Pcae2484060199830 | Terpenoid | CYP76 | medium | pass |
| Pcae2484060199840 | Terpenoid | CYP76 | low | borderline |
| Pcae2486660204700 | Terpenoid | CYP76 | low | borderline |
| Pcae2486890204950 | Terpenoid | CYP76 | medium | borderline |
| Pcae2489140209440 | Terpenoid | CYP76 | medium | borderline |
| Pcae2489460210100 | Terpenoid | CYP76 | low | borderline |
| Pcae2490670212250 | Terpenoid | CYP76 | low | borderline |
| Pcae2497870226440 | Terpenoid | CYP76 | medium | borderline |
| Pcae2499510227820 | Terpenoid | CYP76 | medium | borderline |
| Pcae1364370017520 | Terpenoid | DXR | high | pass |
| Pcae2069110087590 | Terpenoid | DXS | low | borderline |
| Pcae2069110087600 | Terpenoid | DXS | medium | pass |
| Pcae2139250106490 | Terpenoid | DXS | medium | pass |
| Pcae2438460159960 | Terpenoid | DXS | medium | pass |
| Pcae2075360089840 | Terpenoid | FPPS | medium | pass |
| Pcae2078890091270 | Terpenoid | FPPS | medium | pass |
| Pcae2491330213410 | Terpenoid | FPPS | medium | pass |
| Pcae1663930041090 | Terpenoid | GGPPS | medium | borderline |
| Pcae2122690102710 | Terpenoid | GGPPS | medium | borderline |
| Pcae2123600103830 | Terpenoid | GGPPS | medium | borderline |
| Pcae2386990145760 | Terpenoid | GGPPS | medium | borderline |
| Pcae2466790180120 | Terpenoid | GGPPS | medium | borderline |
| Pcae2480870195000 | Terpenoid | GGPPS | medium | borderline |
| Pcae2479080193210 | Terpenoid | HDR/IspH | high | pass |
| Pcae2479080193220 | Terpenoid | HDS/IspG | high | pass |
| Pcae2438090159680 | Terpenoid | HMGS | high | pass |
| Pcae2120400100320 | Terpenoid | IDI | medium | pass |
| Pcae2064190085920 | Terpenoid | MCT/IspD | low | borderline |
| Pcae2376510137170 | Terpenoid | MCT/IspD | low | borderline |
| Pcae2416650150880 | Terpenoid | MCT/IspD | low | borderline |
| Pcae2479120193290 | Terpenoid | MCT/IspD | high | pass |
| Pcae1911910069750 | Terpenoid | MDS/IspF | high | pass |
| Pcae2383300141700 | Terpenoid | MDS/IspF | high | pass |
| Pcae2437260158820 | Terpenoid | MVD | medium | pass |
| Pcae2490730212530 | Terpenoid | MVD | medium | pass |