PlantSME Plant secondary metabolism enzyme database

Prasinoderma coloniale (prasinoderma_coloniale)

Imported from atlas release summary for Prasinoderma coloniale.

88
Candidate Genes
79
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Current group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 39.77% Alkaloid pathway 28.41% Steroid pathway 13.64% Phenylpropanoid pathway 12.5% Rosmarinic acid pathway 4.55% Flavonoid pathway 1.14%
Family Distribution
BAHD 9.18% 4CL 8.54% NMT 6.96% IFR 5.38% STR 4.43% CYP71 4.11% C3'H/CYP98A 3.8% POD 3.48%
Other Families 54.11%
More Families (71)
C4H 9 2.85% CNMT 8 2.53% SMT1/SMT2/SMT3 7 2.22% CYP76 7 2.22% TRI/TRII 6 1.9% CAS 6 1.9% T3O 5 1.58% FNS 5 1.58% IFS 5 1.58% CPR 5 1.58% CPD/CYP90A1 5 1.58% COR 4 1.27% GS 4 1.27% H6H 4 1.27% PMT 4 1.27% F3H 4 1.27% CAD 4 1.27% CSE 4 1.27% DWF4/CYP90B1 4 1.27% SQS/FDFT1 3 0.95% AACT 3 0.95% FPPS 3 0.95% GGPPS 3 0.95% ODC 2 0.63% G8O/G8H 2 0.63% IO 2 0.63% ANR 2 0.63% F3'H/CYP75B 2 0.63% DFR 2 0.63% CCR 2 0.63% TAT 2 0.63% CYP90D1 2 0.63% BR6OX2/CYP85A2 2 0.63% DWF1 2 0.63% PYKS 1 0.32% 7DLH 1 0.32% ADC 1 0.32% CODM/T6ODM 1 0.32% MPO 1 0.32% TYDC_DDC 1 0.32% LAMT 1 0.32% 8HGO 1 0.32% BBE 1 0.32% T16H 1 0.32% CYP80B1 1 0.32% CYP719 1 0.32% TDC 1 0.32% SLS 1 0.32% ANS/LDOX 1 0.32% UFGT 1 0.32% F3'5'H/CYP75A 1 0.32% LAC 1 0.32% CCoAOMT 1 0.32% FK 1 0.32% DWF5 1 0.32% DWF7 1 0.32% DET2 1 0.32% CYP51G1 1 0.32% BR6OX1/CYP85A1 1 0.32% HYD1 1 0.32% CPI1 1 0.32% MDS/IspF 1 0.32% IDI 1 0.32% DXR 1 0.32% HDS/IspG 1 0.32% UGT 1 0.32% CMK/IspE 1 0.32% MCT/IspD 1 0.32% DXS 1 0.32% HDR/IspH 1 0.32% MVK 1 0.32%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 35 12 BAHD (14) View species results
Alkaloid pathway 25 11 NMT (7) View species results
Steroid pathway 12 7 CAS (6) View species results
Phenylpropanoid pathway 11 3 POD (8) View species results
Rosmarinic acid pathway 4 2 CPR (3) View species results
Flavonoid pathway 1 1 IFR (1) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 21 78 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, G8O/G8H, IFS, IO, SLS, T16H, T3O
BAHD/acyltransferase 1 29 BAHD
Identification Result List
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Gene Pathway Family Confidence Status Best Target
Pcol01G0003110.1 Alkaloid COR low borderline COR__00002__sp_Q9SQ67_COR14_PAPSO
Pcol03G0000570.1 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
Pcol05G0003390.1 Alkaloid COR low borderline COR__00002__sp_Q9SQ67_COR14_PAPSO
Pcol13G0002450.1 Alkaloid COR medium pass COR__00005__sp_Q9SQ70_COR11_PAPSO