PlantSME Plant secondary metabolism enzyme database

Prasinoderma coloniale (prasinoderma_coloniale)

Imported from atlas release summary for Prasinoderma coloniale.

88
Candidate Genes
79
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Current group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 39.77% Alkaloid pathway 28.41% Steroid pathway 13.64% Phenylpropanoid pathway 12.5% Rosmarinic acid pathway 4.55% Flavonoid pathway 1.14%
Family Distribution
BAHD 9.18% 4CL 8.54% NMT 6.96% IFR 5.38% STR 4.43% CYP71 4.11% C3'H/CYP98A 3.8% POD 3.48%
Other Families 54.11%
More Families (71)
C4H 9 2.85% CNMT 8 2.53% SMT1/SMT2/SMT3 7 2.22% CYP76 7 2.22% TRI/TRII 6 1.9% CAS 6 1.9% T3O 5 1.58% FNS 5 1.58% IFS 5 1.58% CPR 5 1.58% CPD/CYP90A1 5 1.58% COR 4 1.27% GS 4 1.27% H6H 4 1.27% PMT 4 1.27% F3H 4 1.27% CAD 4 1.27% CSE 4 1.27% DWF4/CYP90B1 4 1.27% SQS/FDFT1 3 0.95% AACT 3 0.95% FPPS 3 0.95% GGPPS 3 0.95% ODC 2 0.63% G8O/G8H 2 0.63% IO 2 0.63% ANR 2 0.63% F3'H/CYP75B 2 0.63% DFR 2 0.63% CCR 2 0.63% TAT 2 0.63% CYP90D1 2 0.63% BR6OX2/CYP85A2 2 0.63% DWF1 2 0.63% PYKS 1 0.32% 7DLH 1 0.32% ADC 1 0.32% CODM/T6ODM 1 0.32% MPO 1 0.32% TYDC_DDC 1 0.32% LAMT 1 0.32% 8HGO 1 0.32% BBE 1 0.32% T16H 1 0.32% CYP80B1 1 0.32% CYP719 1 0.32% TDC 1 0.32% SLS 1 0.32% ANS/LDOX 1 0.32% UFGT 1 0.32% F3'5'H/CYP75A 1 0.32% LAC 1 0.32% CCoAOMT 1 0.32% FK 1 0.32% DWF5 1 0.32% DWF7 1 0.32% DET2 1 0.32% CYP51G1 1 0.32% BR6OX1/CYP85A1 1 0.32% HYD1 1 0.32% CPI1 1 0.32% MDS/IspF 1 0.32% IDI 1 0.32% DXR 1 0.32% HDS/IspG 1 0.32% UGT 1 0.32% CMK/IspE 1 0.32% MCT/IspD 1 0.32% DXS 1 0.32% HDR/IspH 1 0.32% MVK 1 0.32%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 35 12 BAHD (14) View species results
Alkaloid pathway 25 11 NMT (7) View species results
Steroid pathway 12 7 CAS (6) View species results
Phenylpropanoid pathway 11 3 POD (8) View species results
Rosmarinic acid pathway 4 2 CPR (3) View species results
Flavonoid pathway 1 1 IFR (1) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 21 78 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, G8O/G8H, IFS, IO, SLS, T16H, T3O
BAHD/acyltransferase 1 29 BAHD
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
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Gene Pathway Family Confidence Status Best Target
Pcol01G0001340.1 Phenylpropanoid POD low borderline POD__00015__sp_Q69SV0_APX8_ORYSJ
Pcol01G0007750.1 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Pcol02G0001130.1 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Pcol04G0001030.1 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Pcol04G0003020.1 Phenylpropanoid POD low borderline POD__00007__sp_P0C5C9_REHYA_ORYSJ
Pcol04G0004320.1 Phenylpropanoid POD low borderline POD__00012__sp_Q10N21_APX1_ORYSJ
Pcol05G0003650.1 Phenylpropanoid POD medium pass POD__00003__sp_A9PCL4_PRX2_POPTR
Pcol10G0002140.1 Phenylpropanoid POD medium pass POD__00015__sp_Q69SV0_APX8_ORYSJ
Pcol13G0002300.1 Phenylpropanoid POD medium pass POD__00008__sp_P52574_REHY_SYNRU
Pcol14G0002260.1 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Pcol15G0000930.1 Phenylpropanoid POD medium pass POD__00017__sp_Q75SY5_PRXQ_GENTR