PlantSME Plant secondary metabolism enzyme database

Prunus mira (prunus_mira)

Imported from atlas release summary for Prunus mira.

1462
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.62% Alkaloid pathway 22.64% Phenylpropanoid pathway 20.59% Flavonoid pathway 14.02% Rosmarinic acid pathway 7.93% Steroid pathway 5.2%
Family Distribution
C4H 6.52% C3'H/CYP98A 5.92% UGT 5.41% BAHD 4.98% 7DLGT 4.49% UFGT 4.38% CYP76 4.18% IFS 3.98%
Other Families 60.14%
More Families (97)
POD 122 3.49% T3O 112 3.2% 4CL 111 3.18% F3H 107 3.06% DWF4/CYP90B1 85 2.43% NMT 69 1.97% H6H 68 1.95% F3'H/CYP75B 67 1.92% BR6OX2/CYP85A2 64 1.83% CAD 59 1.69% CODM/T6ODM 54 1.55% STR 53 1.52% GS 46 1.32% SMT1/SMT2/SMT3 43 1.23% BBE 40 1.14% CSE 40 1.14% TRI/TRII 38 1.09% LAC 37 1.06% CYP71 36 1.03% SGD 35 1.0% CYP90D1 34 0.97% 7DLH 33 0.94% IFR 32 0.92% CAS 32 0.92% IO 31 0.89% PYKS 29 0.83% T16H 27 0.77% HCT 27 0.77% TPS 27 0.77% ANR 26 0.74% RAS 26 0.74% GES 23 0.66% BR6OX1/CYP85A1 23 0.66% COMT 22 0.63% PMT 21 0.6% F3'5'H/CYP75A 21 0.6% G8O/G8H 20 0.57% LAMT 20 0.57% NCS 19 0.54% CCR 19 0.54% SLS 17 0.49% TAT 17 0.49% COR 15 0.43% 16OMT 15 0.43% FNS 14 0.4% F5H/CYP84A 14 0.4% ANS/LDOX 12 0.34% 8HGO 9 0.26% CPD/CYP90A1 9 0.26% CYP51G1 9 0.26% ROT3/CYP90C1 9 0.26% CHS 8 0.23% CCoAOMT 8 0.23% MPO 7 0.2% CNMT 7 0.2% ISY 7 0.2% TYDC_DDC 7 0.2% FPPS 7 0.2% DFR 6 0.17% PAL 6 0.17% HPPR 6 0.17% SQE 6 0.17% SQS/FDFT1 6 0.17% CYP719 5 0.14% AACT 5 0.14% GGPPS 5 0.14% CHI 4 0.11% CPR 4 0.11% MVD 4 0.11% HDR/IspH 4 0.11% HMGR 4 0.11% CYP80B1 3 0.09% CYP80F1 3 0.09% ODC 3 0.09% FK 3 0.09% DET2 3 0.09% SMO1/SMO2 3 0.09% MVK 3 0.09% DXS 3 0.09% TDC 2 0.06% FLS 2 0.06% HYD1 2 0.06% HDS/IspG 2 0.06% MCT/IspD 2 0.06% DXR 2 0.06% XMT_MXMT_DXMT 1 0.03% 6OMT_4OMT_SOMT 1 0.03% ADC 1 0.03% DWF1 1 0.03% DWF5 1 0.03% DWF7 1 0.03% CPI1 1 0.03% CMK/IspE 1 0.03% PMK 1 0.03% HMGS 1 0.03% MDS/IspF 1 0.03% IDI 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 433 19 UGT (184) View species results
Alkaloid pathway 331 22 7DLGT (83) View species results
Phenylpropanoid pathway 301 11 POD (115) View species results
Flavonoid pathway 205 11 UFGT (147) View species results
Rosmarinic acid pathway 116 7 C4H (54) View species results
Steroid pathway 76 12 SMT1/SMT2/SMT3 (28) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1342 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 227 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
Reset
Gene Pathway Family Confidence Status
prunus_mira_Pmi01g0029 Alkaloid PYKS medium pass
prunus_mira_Pmi01g0031 Alkaloid PYKS high pass
prunus_mira_Pmi01g0032 Alkaloid PYKS medium pass
prunus_mira_Pmi01g0268 Alkaloid PYKS low borderline
prunus_mira_Pmi01g1395 Alkaloid PYKS low borderline
prunus_mira_Pmi01g3402 Alkaloid PYKS low borderline
prunus_mira_Pmi01g4077 Alkaloid PYKS low borderline
prunus_mira_Pmi01g4299 Alkaloid PYKS low borderline
prunus_mira_Pmi01g4995 Alkaloid PYKS low borderline
prunus_mira_Pmi01g5986 Alkaloid PYKS low borderline
prunus_mira_Pmi01g5987 Alkaloid PYKS low borderline
prunus_mira_Pmi02g1255 Alkaloid PYKS low borderline
prunus_mira_Pmi02g1451 Alkaloid PYKS high pass
prunus_mira_Pmi02g2162 Alkaloid PYKS low borderline
prunus_mira_Pmi02g2432 Alkaloid PYKS low borderline
prunus_mira_Pmi02g2433 Alkaloid PYKS low borderline
prunus_mira_Pmi02g2434 Alkaloid PYKS low borderline
prunus_mira_Pmi02g2435 Alkaloid PYKS low borderline
prunus_mira_Pmi03g2287 Alkaloid PYKS low borderline
prunus_mira_Pmi04g2066 Alkaloid PYKS low borderline
prunus_mira_Pmi04g2443 Alkaloid PYKS high pass
prunus_mira_Pmi04g2450 Alkaloid PYKS high pass
prunus_mira_Pmi04g2457 Alkaloid PYKS high pass
prunus_mira_Pmi05g0849 Alkaloid PYKS low borderline
prunus_mira_Pmi06g0839 Alkaloid PYKS low borderline
prunus_mira_Pmi07g2629 Alkaloid PYKS low borderline
prunus_mira_Pmi08g0438 Alkaloid PYKS low borderline
prunus_mira_Pmi08g1154 Alkaloid PYKS low borderline
prunus_mira_Pmi08g1756 Alkaloid PYKS high pass